View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14989_high_6 (Length: 239)
Name: NF14989_high_6
Description: NF14989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14989_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41108231 - 41108459
Alignment:
| Q |
1 |
attccaaaaggtgcacaggttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108231 |
attccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
41108330 |
T |
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| Q |
101 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108331 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggtagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcattt |
41108430 |
T |
|
| Q |
201 |
gatgttgggatcattgatcaactcctttg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41108431 |
gatgttgggatcattgatcaactcctttg |
41108459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 41129355 - 41129583
Alignment:
| Q |
1 |
attccaaaaggtgcacaggttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41129355 |
attccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
41129454 |
T |
|
| Q |
101 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41129455 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgtttcattt |
41129554 |
T |
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| Q |
201 |
gatgttgggatcattgatcaactcctttg |
229 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
41129555 |
gatgttgggatcattgattaactcctttg |
41129583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 41143328 - 41143100
Alignment:
| Q |
1 |
attccaaaaggtgcacaggttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41143328 |
attccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
41143229 |
T |
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| Q |
101 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41143228 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggaagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcattt |
41143129 |
T |
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| Q |
201 |
gatgttgggatcattgatcaactcctttg |
229 |
Q |
| |
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|||||||||||||||||| |||||||||| |
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|
| T |
41143128 |
gatgttgggatcattgattaactcctttg |
41143100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 41119186 - 41118958
Alignment:
| Q |
1 |
attccaaaaggtgcacaggttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41119186 |
attccaaaaggtgcacaagttctgatcaatgaatgggctattggtagaacagacatatgggatgatgcacatttgttttcaccagaaagatttttgggtt |
41119087 |
T |
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| Q |
101 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41119086 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggtagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttacattt |
41118987 |
T |
|
| Q |
201 |
gatgttgggatcattgatcaactcctttg |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41118986 |
gatgttgggatcattgatcaactcctttg |
41118958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41035825 - 41036048
Alignment:
| Q |
1 |
attccaaaaggtgcacaggttctgatcaatgaatgggctattggtagaacagacatatgggatgatgctcatttgttttcaccagaaagatttttgggtt |
100 |
Q |
| |
|
|||||||| |||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| || | |
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| T |
41035825 |
attccaaagggtgcacaaattcggataaatgaatgggctattggtagaacaaacatatgggatgatgctgatttattttcaccagaaagatttttaggat |
41035924 |
T |
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| Q |
101 |
ctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcattt |
200 |
Q |
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||||||||||| ||||||||||||| ||||| |||||||| || || ||||| ||||||||||||||||| |||||| | ||| |||||||| |||||| |
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| T |
41035925 |
ctgaaattgatatcaaaggtcgacactttaatcttacaccatttggtagtgggagacgtatatgtcctggttcaccattggctattaggatgatgcattc |
41036024 |
T |
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| Q |
201 |
gatgttgggatcattgatcaactc |
224 |
Q |
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||||||||||||| | |||||||| |
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| T |
41036025 |
gatgttgggatcactaatcaactc |
41036048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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