View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14989_high_9 (Length: 207)

Name: NF14989_high_9
Description: NF14989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14989_high_9
NF14989_high_9
[»] chr6 (2 HSPs)
chr6 (1-207)||(12122196-12122398)
chr6 (1-29)||(12122113-12122141)
[»] chr4 (3 HSPs)
chr4 (43-200)||(19098629-19098786)
chr4 (47-185)||(14861654-14861792)
chr4 (70-204)||(9833388-9833521)
[»] chr7 (2 HSPs)
chr7 (46-206)||(12230799-12230961)
chr7 (48-193)||(42421902-42422046)
[»] chr1 (2 HSPs)
chr1 (47-204)||(40560608-40560765)
chr1 (71-131)||(21684855-21684915)
[»] chr5 (1 HSPs)
chr5 (47-204)||(35816669-35816826)
[»] chr8 (1 HSPs)
chr8 (84-204)||(12732225-12732334)
[»] chr2 (1 HSPs)
chr2 (71-131)||(29536462-29536523)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 12122196 - 12122398
Alignment:
Q  1 agcaattgcattatatttcatttttgaaggaatgctgtctaatgtaggaagcagatcctctcctgcctctctctcatgtcttttgtcctgctcttgatct 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    ||| |||||||||||||||||||||    
T  12122196 agcaattgcattatatttcatttttgaaggaatgttgtctaatgtaggaagcagatcctctcttgcctctc----atgccttttgtcctgctcttgatct 12122291  T
Q  101 gaaccatccatcaattaacttgtgttgttgattgctcatagttgactgaaattgatgatccagatcgtgcagcaccgtcatgcggcagcagagaatccgg 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  12122292 gaaccatccatcaattaatttgtgttgttgattgctcatagttgactgaaattaatggtccagatcgcgcatcaccgtcatgcggcagcagagaatccgg 12122391  T
Q  201 gtccgtc 207  Q
    |||||||    
T  12122392 gtccgtc 12122398  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 12122113 - 12122141
Alignment:
Q  1 agcaattgcattatatttcatttttgaag 29  Q
    |||||||||||||||||||||||||||||    
T  12122113 agcaattgcattatatttcatttttgaag 12122141  T

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Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 19098629 - 19098786
Alignment:
Q  43 tgtaggaagcagatcctctcctgcctctctctcatgtcttttgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttgattgctcatagt 142  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |    
T  19098629 tgtaggaagcagatcctcttctgcctctctctcatgctttttgtcctgctcttgatctgaatcatccatcaattaacttgtgttgttgattgcttataat 19098728  T
Q  143 tgactgaaattgatgatccagatcgtgcagcaccgtcatgcggcagcagagaatccgg 200  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  19098729 tgactgaaattgatggtccagatcgcgcagcaccgtcatgcggcagcagagaatccgg 19098786  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 14861654 - 14861792
Alignment:
Q  47 ggaagcagatcctctcctgcctctctctcatgtcttttgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttgattgctcatagttgac 146  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||     
T  14861654 ggaagcagatcatctcctgcctctctctcatgccttttgtcctgctcttaatctgaaccatccatcaattaacttgtgttgttgattgcttatagttgat 14861753  T
Q  147 tgaaattgatgatccagatcgtgcagcaccgtcatgcgg 185  Q
    ||||||||||| ||||||||   ||||||||||||||||    
T  14861754 tgaaattgatggtccagatcccacagcaccgtcatgcgg 14861792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 9833388 - 9833521
Alignment:
Q  70 tctctcatgtcttttgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttgattgctcatagttgactgaaattgatgatccagatcgtg 169  Q
    |||||||||||||  ||| ||||||| |||||||||||||||||||||  |||||||| | | | |  ||||||||| |||||  ||||| ||||||||     
T  9833388 tctctcatgtcttc-gtcatgctctttatctgaaccatccatcaattactttgtgttgctaaattcctatagttgacagaaatcaatgattcagatcgta 9833486  T
Q  170 cagcaccgtcatgcggcagcagagaatccgggtcc 204  Q
    ||  ||||||||||||||  |||| || |||||||    
T  9833487 caaaaccgtcatgcggcaatagaggattcgggtcc 9833521  T

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Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 46 - 206
Target Start/End: Original strand, 12230799 - 12230961
Alignment:
Q  46 aggaagcagatcctctcctgcctct--ctctcatgtcttttgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttgattgctcatagtt 143  Q
    |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  12230799 aggaagcagatcctctcctgcctctctctctcatgccttttgtcctgctcttgatctgaataatccatcaattaacttgtgttgttgattgcttatagtt 12230898  T
Q  144 gactgaaattgatgatccagatcgtgcagcaccgtcatgcggcagcagagaatccgggtccgt 206  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  12230899 gactgaaattgatggtccagatcgcgtagcaccgtcatgcggcagcagagaatccgggtccgt 12230961  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 42422046 - 42421902
Alignment:
Q  48 gaagcagatcctctcctgcctctctctcatgtcttttgtcctgctc-ttgatctgaaccatccatcaattaacttgtgttgttgattgctcatagttgac 146  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||| ||||||||||  ||||||||||||| || ||||||||| | || ||| |||||    
T  42422046 gaagcaaatcctcttctgcctctctctcatgccttttgtcctgctctttgatctgaa-aatccatcaattaatttatgttgttgactact-atatttgac 42421949  T
Q  147 tgaaattgatgatccagatcgtgcagcaccgtcatgcggcagcagag 193  Q
    ||| ||| ||| ||||||||| ||| ||| |||||||||||||||||    
T  42421948 tgagattaatggtccagatcgcgcaacactgtcatgcggcagcagag 42421902  T

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Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 40560765 - 40560608
Alignment:
Q  47 ggaagcagatcctctcctgcctctctctcatgtcttttgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttgattgctcatagttgac 146  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  40560765 ggaagcagatcctctcctgcctctctcttatgccttttgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttgattgtttatagttgaa 40560666  T
Q  147 tgaaattgatgatccagatcgtgcagcaccgtcatgcggcagcagagaatccgggtcc 204  Q
    ||||||||||| || |||||  ||||||||||||||||||||||||||||||||||||    
T  40560665 tgaaattgatggtctagatcacgcagcaccgtcatgcggcagcagagaatccgggtcc 40560608  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 21684855 - 21684915
Alignment:
Q  71 ctctcatgtcttttgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttga 131  Q
    |||||||| |||| ||| ||||||| ||||||||||||||||||||||  |||||| ||||    
T  21684855 ctctcatgcctttcgtcttgctcttaatctgaaccatccatcaattaatatgtgttattga 21684915  T

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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 35816669 - 35816826
Alignment:
Q  47 ggaagcagatcctctcctgcctctctctcatgtcttttgtcctgctctt-gatctgaaccatccatcaattaacttgtgttgttgattgctcatagttga 145  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||||| ||| ||||||||||||||||||| ||||||| |||| |||| ||| ||||    
T  35816669 ggaagcagatcctctcccgcctctctctcatgccttttgccctgctctttgatatgaaccatccatcaattaatttgtgttattgactgct-atatttga 35816767  T
Q  146 ctgaaattgatgatccagatcgtgcagcaccgtcatgcggcagcagagaatccgggtcc 204  Q
    || | ||  ||| | ||||||||||||||||||||||||||||||||| ||||||||||    
T  35816768 cttagatcaatggtgcagatcgtgcagcaccgtcatgcggcagcagaggatccgggtcc 35816826  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 12732225 - 12732334
Alignment:
Q  84 tgtcctgctcttgatctgaaccatccatcaattaacttgtgttgttgattgctcatagttgactgaaattgatgatccagatcgtgcagcaccgtcatgc 183  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||| | |           |||||||| ||||||||| |||||| | ||||||    
T  12732225 tgtcctgctcttgatctgaatcatccatcaattaacttgtgttgttcattgttaa-----------aattgatggtccagatcgcgcagcatcatcatgc 12732313  T
Q  184 ggcagcagagaatccgggtcc 204  Q
     |||||| |||||||||||||    
T  12732314 agcagcaaagaatccgggtcc 12732334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 29536523 - 29536462
Alignment:
Q  71 ctctcatgtcttttgtcctgctctt-gatctgaaccatccatcaattaacttgtgttgttga 131  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| | || |||||||    
T  29536523 ctctcatgccttttgtcctgctctttgatctgaaccatccatcaattaattggtattgttga 29536462  T

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