View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14989_low_3 (Length: 339)
Name: NF14989_low_3
Description: NF14989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14989_low_3 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 18079440 - 18079759
Alignment:
| Q |
18 |
tttacgtaattgaggttctgtttctcccctttttagattaactattgatgtgatttgttgtattctatatttgaaatgtgataatctggttcactacagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18079440 |
tttacgtaattgaggttctgtttctcccctttttagattaactattgatgtgatttgttgtattctatatttgaaatgtgataatctggttcactacagg |
18079539 |
T |
|
| Q |
118 |
caattaaaatgaagacaaaaaccaacatcaaccatgaggtcgagctctccaagtatatgctgaaagacttcttccatatttaagatgatcggatgaagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
18079540 |
caattaaaatgaagacaaaaaccaacatcaaccatgaggtcgagctctccaagtatatgctgaaagacttcttccatatttaagacgattggatgaagaa |
18079639 |
T |
|
| Q |
218 |
caaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtcaaaatgtctcacttcttgctgtccat---ttcttgcttttttctctatgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
18079640 |
caaatggtcgagaaggatatagcagcaaagagacaatgtactttttcgtccaaatgtctcacttcttgctgtccatttcttcttgcttttttctctatcg |
18079739 |
T |
|
| Q |
315 |
ttttattaatctgtgctgct |
334 |
Q |
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|||||||||| |||| |||| |
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| T |
18079740 |
ttttattaatgtgtgttgct |
18079759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 52 - 334
Target Start/End: Original strand, 51479832 - 51480118
Alignment:
| Q |
52 |
agattaactattgatgtgatttgttgtattctatatttgaaatgtgataatctggttcactacaggcaattaaaatgaagacaaaaaccaacatcaacca |
151 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||| |||||| |
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| T |
51479832 |
agattaactattcatgtgatttgttgtattctacatttgaaatgtgatcatctggttcactacaggaaattaaaacgaagacagaaaccaacaacaacca |
51479931 |
T |
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| Q |
152 |
tgaggtcgagctctccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagaga |
250 |
Q |
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|||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
51479932 |
tgagttcgagctctccaagtatatggtgaaagaacttcttccatatttaagacgattggatgaagaacaaatggtcgagaaggagatagaagcaaagaga |
51480031 |
T |
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| Q |
251 |
caatgtactttttcgtcaaaatgtctcacttcttgctgtccat---ttcttgcttttttctctatggttttattaatctgtgctgct |
334 |
Q |
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||| ||||||||||||| ||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||| |||| |||| |
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| T |
51480032 |
caaggtactttttcgtccaaaagtctcatttcttgctgtccatttcttcttgcttttttctctatccttttattaatgtgtgttgct |
51480118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 39 - 286
Target Start/End: Complemental strand, 30207522 - 30207275
Alignment:
| Q |
39 |
ttctcccctttttagattaactattgatgtgatttgttgtattctatatttgaaatgtgataatctggttcactacaggcaattaaaatgaagacaaaaa |
138 |
Q |
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|||||||| || ||||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| ||| | ||| |
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| T |
30207522 |
ttctcccccttatagatcaactattcttgtgatttgttgcattctacatttgaaatgtgataatctggtttactacaggcaattaaagataagcgagaaa |
30207423 |
T |
|
| Q |
139 |
ccaacatcaaccatgaggtcgagctctccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatat |
237 |
Q |
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|| ||| |||||||||| |||||||||||||||||| ||||| ||||||||| ||||||||| || ||||||||||||||||| ||||||||| || |
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| T |
30207422 |
cctacaatgaccatgaggttgagctctccaagtatatgttgaaaatacttcttccgtatttaagacaattggatgaagaacaaatggccgagaaggagat |
30207323 |
T |
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| Q |
238 |
agcagcaaagagacaatgtactttttcgtcaaaatgtctcacttcttgc |
286 |
Q |
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| T |
30207322 |
agaagcaaagagacaaggta-tttttcctccaagagtctcacttcttgc |
30207275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 66 - 298
Target Start/End: Original strand, 51496884 - 51497118
Alignment:
| Q |
66 |
tgtgatttgttgtattctatatttgaaatgtg-ataatctggttcactacaggcaattaaaatgaagacaaaaaccaacatcaaccatgaggtcgagctc |
164 |
Q |
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|||||||| |||||||||| |||| ||||| | ||||||| | ||||| |||| |||||||| |||||| ||||||||| || ||||||||| |||| | |
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| T |
51496884 |
tgtgattttttgtattctacatttaaaatggggataatcttggtcactgcaggaaattaaaaagaagacggaaaccaacaacagccatgaggttgagccc |
51496983 |
T |
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| Q |
165 |
tccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtacttttt |
263 |
Q |
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||||| ||||||||||||| |||| ||||||||||||| | | ||||||||| ||||||| |||||||| |||| |||||||| |||| ||| |||| |
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| T |
51496984 |
tccaaatatatgctgaaagtactttttccatatttaagtcgtttggatgaagagcaaatggctgagaaggagatagaagcaaagatacaaggtatatttt |
51497083 |
T |
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| Q |
264 |
cgtcaaaatgtctcacttcttgctgtccatttctt |
298 |
Q |
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| T |
51497084 |
cctccaaaagtcttacttcttgcaatccatttctt |
51497118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 51455436 - 51455535
Alignment:
| Q |
153 |
gaggtcgagctctccaagtatatgctgaaag-acttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagac |
251 |
Q |
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||||| ||| |||| |||||| ||||||||| |||||||||| |||||||| | | ||||| |||||||||| | |||||||| | || ||| ||||||| |
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| T |
51455436 |
gaggttgagttctctaagtatctgctgaaaggacttcttccacatttaagacggttggatgcagaacaaatgattgagaaggaaagagaagccaagagac |
51455535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 27395957 - 27396064
Alignment:
| Q |
158 |
cgagctctccaagtatatgctgaaaga-cttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgt |
256 |
Q |
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|||| |||||||||||||||| |||| ||||||||| |||||| | ||| |||| |||||||||||| ||||||||| |||| ||| ||| |||| || |
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| T |
27395957 |
cgagttctccaagtatatgctcaaagctcttcttccacatttaatacgattggatcaagaacaaatggccgagaaggagatagaagccaagttacaaggt |
27396056 |
T |
|
| Q |
257 |
actttttc |
264 |
Q |
| |
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| |||||| |
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| T |
27396057 |
attttttc |
27396064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 264
Target Start/End: Complemental strand, 138043 - 137941
Alignment:
| Q |
163 |
tctccaagtatatgctgaaaga-cttcttccatatttaagatgatcggatgaagaacaaatggtcgagaaggatatagcagcaaagagacaatgtacttt |
261 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||||||| || ||| ||||||||||| |||||||| |||| ||| |||| |||| ||| ||| |
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| T |
138043 |
tctccaagtatatgctgaaataccttcttccatatttaagagaattagatctagaacaaatggctgagaaggagatagaagccaagatacaaggtatttt |
137944 |
T |
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| Q |
262 |
ttc |
264 |
Q |
| |
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||| |
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|
| T |
137943 |
ttc |
137941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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