View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14989_low_9 (Length: 226)
Name: NF14989_low_9
Description: NF14989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14989_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 36992708 - 36992609
Alignment:
| Q |
27 |
aattgtgtgattaagttatggttttcctaaaggattaaaacttggtaagtttaaagaatatatgttgggaagctaaatattagctataagaatatctaag |
126 |
Q |
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| T |
36992708 |
aattgtgtgattaagctatgattttcctaaaggattaaaacttg-taagtttaaaggatatatgttggcaagctaaatattagatataagaaaatctaag |
36992610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 37002631 - 37002526
Alignment:
| Q |
20 |
aatgacaaattgtgtgattaagttatggttttcctaaaggattaaaacttggtaagtttaaagaatatatgttgggaagctaaatattagctataagaat |
119 |
Q |
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| T |
37002631 |
aatgacgaattgtgtgattaagttatgattttcctaatggatttcaacttg-taagttttaagaatatatgttggcaagctaaatattagatataagaaa |
37002533 |
T |
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| Q |
120 |
atctaag |
126 |
Q |
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||||||| |
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| T |
37002532 |
atctaag |
37002526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 37002510 - 37002459
Alignment:
| Q |
138 |
tatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatca |
189 |
Q |
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| T |
37002510 |
tatgtgcatatcatgatgtacatgtcagagtaaaacagaagggaatttatca |
37002459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 26647615 - 26647542
Alignment:
| Q |
137 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcagtatattgtttgagtgcacaaga |
212 |
Q |
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| T |
26647615 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcag--tattgtttgagtgcacaaga |
26647542 |
T |
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