View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_100 (Length: 374)
Name: NF1498_high_100
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_100 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 47986610 - 47986267
Alignment:
| Q |
16 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47986610 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
47986511 |
T |
|
| Q |
116 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgt--gtgtaccacctcat |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47986510 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
47986411 |
T |
|
| Q |
214 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47986410 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
47986311 |
T |
|
| Q |
314 |
aacttctgacaaataatgccgtcagttattgacagtttacatgg |
357 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47986310 |
aacttctgacaaataatgtcgtcagttattgacagtttacatgg |
47986267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 47995897 - 47995554
Alignment:
| Q |
16 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47995897 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
47995798 |
T |
|
| Q |
116 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgt--gtgtaccacctcat |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47995797 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
47995698 |
T |
|
| Q |
214 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47995697 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
47995598 |
T |
|
| Q |
314 |
aacttctgacaaataatgccgtcagttattgacagtttacatgg |
357 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47995597 |
aacttctgacaaataatgtcgtcagttattgacagtttacatgg |
47995554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 48005184 - 48004841
Alignment:
| Q |
16 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48005184 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
48005085 |
T |
|
| Q |
116 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgt--gtgtaccacctcat |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48005084 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
48004985 |
T |
|
| Q |
214 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48004984 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
48004885 |
T |
|
| Q |
314 |
aacttctgacaaataatgccgtcagttattgacagtttacatgg |
357 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48004884 |
aacttctgacaaataatgtcgtcagttattgacagtttacatgg |
48004841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 357
Target Start/End: Complemental strand, 48014469 - 48014126
Alignment:
| Q |
16 |
aatattttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggat |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48014469 |
aatattttggatgcattaattgccacagtttttaaggatttggaatcaattgcaacaacatcacagttatcaaatatgactacttctacagtttcaggat |
48014370 |
T |
|
| Q |
116 |
caaaatattccttcaaatctctcttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgt--gtgtaccacctcat |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48014369 |
caaaatattccttcaaatctcttttaattcaaatattctttgttgacatacattctctttgtctccacttgtatgcctgcttgtgtgtgtaccacctcat |
48014270 |
T |
|
| Q |
214 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttgaataatgttg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
48014269 |
acatttgaattctttagtttatatgtctataaacaatacacgcaagtctacacaacaatttgctaaaggggtaaaatacttaaaaatttaaataatgttg |
48014170 |
T |
|
| Q |
314 |
aacttctgacaaataatgccgtcagttattgacagtttacatgg |
357 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48014169 |
aacttctgacaaataatgtcgtcagttattgacagtttacatgg |
48014126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 5097083 - 5097213
Alignment:
| Q |
19 |
attttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctacagtttcaggatcaa |
118 |
Q |
| |
|
||||||||||| |||| |||||||| || ||||| || ||||||||||||| |||||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
5097083 |
attttggatgccttatatgccacagattataaggggtttgaatcaattgcaattacatcacaggtatcaaatatgactacttctacatcacaagtatcag |
5097182 |
T |
|
| Q |
119 |
aatattccttcaaatctctcttaattcaaat |
149 |
Q |
| |
|
|| |||||||||| ||||| ||||||||||| |
|
|
| T |
5097183 |
aacattccttcaagtctcttttaattcaaat |
5097213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 5128123 - 5128037
Alignment:
| Q |
19 |
attttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctaca |
105 |
Q |
| |
|
||||||||||| || | ||||||| || |||||| |||||| || ||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
5128123 |
attttggatgccttgtatgccacaaattataaggagttggaacaaactgcaagtacatcacaagtatcaattatgactacttctaca |
5128037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 5157334 - 5157248
Alignment:
| Q |
19 |
attttggatgcattatttgccacagtttttaaggatttggaatcaattgcaacaacatcacaattatcaaatatgactacttctaca |
105 |
Q |
| |
|
||||||||||| | | ||||||| || |||| |||||||| ||| | || | |||||||||||||||||| |||||||||||||| |
|
|
| T |
5157334 |
attttggatgccctgtatgccacaaattctaagaatttggaaccaactacagctacatcacaattatcaaatgtgactacttctaca |
5157248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 5434612 - 5434649
Alignment:
| Q |
68 |
caacaacatcacaattatcaaatatgactacttctaca |
105 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5434612 |
caactacatcacaagtatcaaatatgactacttctaca |
5434649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 5097312 - 5097356
Alignment:
| Q |
201 |
tgtaccacctcatacatttgaattctttagtttatatgtctataa |
245 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
5097312 |
tgtatcacctcatgcatttgaattcttaagtgtatatgtctataa |
5097356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 5350964 - 5351000
Alignment:
| Q |
209 |
ctcatacatttgaattctttagtttatatgtctataa |
245 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
5350964 |
ctcaaacatttgaattctttagtttataagtctataa |
5351000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University