View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_105 (Length: 365)

Name: NF1498_high_105
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_105
NF1498_high_105
[»] chr8 (11 HSPs)
chr8 (182-349)||(10405495-10405659)
chr8 (31-105)||(10405734-10405808)
chr8 (28-86)||(9636185-9636243)
chr8 (194-261)||(41754853-41754920)
chr8 (28-86)||(6295400-6295458)
chr8 (36-101)||(38783641-38783706)
chr8 (1-32)||(10405870-10405901)
chr8 (27-101)||(31666249-31666323)
chr8 (32-101)||(25980735-25980804)
chr8 (32-65)||(37513257-37513290)
chr8 (33-105)||(19222414-19222486)
[»] chr3 (5 HSPs)
chr3 (34-99)||(45059251-45059316)
chr3 (28-100)||(18370975-18371047)
chr3 (54-103)||(24695804-24695853)
chr3 (32-65)||(39692532-39692565)
chr3 (33-105)||(53800-53872)
[»] chr5 (5 HSPs)
chr5 (28-101)||(1156958-1157031)
chr5 (194-264)||(28591172-28591243)
chr5 (194-256)||(14891201-14891264)
chr5 (28-101)||(12464207-12464280)
chr5 (36-105)||(17888266-17888335)
[»] chr4 (6 HSPs)
chr4 (28-70)||(35106148-35106190)
chr4 (36-101)||(39121218-39121283)
chr4 (194-262)||(54574421-54574490)
chr4 (37-101)||(50135782-50135846)
chr4 (31-101)||(8718692-8718762)
chr4 (234-270)||(29980346-29980382)
[»] chr6 (3 HSPs)
chr6 (36-109)||(10365020-10365093)
chr6 (234-265)||(6467756-6467787)
chr6 (32-74)||(17772852-17772894)
[»] chr2 (3 HSPs)
chr2 (28-109)||(38587147-38587228)
chr2 (28-109)||(13863205-13863286)
chr2 (36-86)||(42578470-42578520)
[»] chr7 (12 HSPs)
chr7 (28-83)||(19933596-19933651)
chr7 (28-83)||(19964735-19964790)
chr7 (194-256)||(44333141-44333204)
chr7 (36-105)||(44062885-44062954)
chr7 (194-260)||(48646047-48646114)
chr7 (194-256)||(48788730-48788793)
chr7 (31-101)||(22643946-22644016)
chr7 (194-262)||(7259742-7259811)
chr7 (36-109)||(11749222-11749295)
chr7 (28-101)||(20383814-20383887)
chr7 (194-238)||(42477402-42477446)
chr7 (194-261)||(43457454-43457522)
[»] chr1 (10 HSPs)
chr1 (194-240)||(5782433-5782479)
chr1 (194-263)||(32665828-32665898)
chr1 (36-100)||(51048083-51048147)
chr1 (36-107)||(6918291-6918362)
chr1 (31-101)||(741100-741170)
chr1 (28-66)||(38674294-38674332)
chr1 (28-109)||(3935961-3936042)
chr1 (32-65)||(8261526-8261559)
chr1 (28-101)||(32454530-32454603)
chr1 (41-101)||(29232531-29232591)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 182 - 349
Target Start/End: Complemental strand, 10405659 - 10405495
Alignment:
Q  182 ccaaacacaccattaatcatgagtcagagacctatgcgacagcgagatacagagtcaggatcaaagtgactatttactcttttcttaatactcataa-nn 280  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| | |||    ||||||||||||||||||| |||||||||||||||| ||||       
T  10405659 ccaaacacaccattaatcctgagtcagagacctatgcgacagcgaggtgcag----aggatcaaagtgactatttgctcttttcttaatactaataattt 10405564  T
Q  281 nnnnnaagataatcctacaaaaacagaccgaaagaataaaagtttatcgatgtttttgataggttgaat 349  Q
         |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  10405563 tttttaagatagtcctacaaaaacggaccgaaagaataaaaatttatcgatgtttttgataggttgaat 10405495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 10405808 - 10405734
Alignment:
Q  31 taaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaact 105  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10405808 taaaaataatcaacacttctctcttctctatttcttctatctttttgttataccaatcgacacatcaaatcaact 10405734  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 9636185 - 9636243
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaa 86  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||    
T  9636185 ttttaaaaataaacaacacttctctcttctctatttcttctatctttctcttataccaa 9636243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 41754853 - 41754920
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtcaggatcaaagtgactatttactct 261  Q
    |||||| ||||||||||| ||||| ||||||||| | |||| ||||||| ||||||||||||| ||||    
T  41754853 ttaatcctgagtcagagatctatgtgacagcgaggtgcagaatcaggattaaagtgactatttgctct 41754920  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 6295458 - 6295400
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaa 86  Q
    ||||||||||||||||||||||||| ||||| ||||||| | ||||| | |||||||||    
T  6295458 ttttaaaaataatcaacacttctctcttctcaatttcttatctctttcttttataccaa 6295400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 38783641 - 38783706
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    ||||||||||||||||| ||||||||||||| | ||||| | ||||||||| |||  |||||||||    
T  38783641 ataatcaacacttctctcttctctatttcttttgtctttctcttataccaaacaattcatcaaatc 38783706  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 10405901 - 10405870
Alignment:
Q  1 tctatatcaatttaaattgaaaattgatttta 32  Q
    ||||||||||||||||||||||||||||||||    
T  10405901 tctatatcaatttaaattgaaaattgatttta 10405870  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 31666323 - 31666249
Alignment:
Q  27 attttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    |||||| ||||||||||||||||||| |  |||||||||   |||||| | ||||||||| ||| ||||||||||    
T  31666323 attttataaataatcaacacttctctctcttctatttctctcatctttcttttataccaaacaatacatcaaatc 31666249  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 25980735 - 25980804
Alignment:
Q  32 aaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    ||||||||| ||||||||| | |||||||||||||  |||||| | ||||||||| ||| |||| |||||    
T  25980735 aaaaataattaacacttctttcttctctatttctttcatctttctcttataccaaacaatacataaaatc 25980804  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 37513257 - 37513290
Alignment:
Q  32 aaaaataatcaacacttctcttttctctatttct 65  Q
    ||||||||||||||||||||| ||||||||||||    
T  37513257 aaaaataatcaacacttctctcttctctatttct 37513290  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 19222414 - 19222486
Alignment:
Q  33 aaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaact 105  Q
    ||||||| |||||||||| | |||||||| |||||||||| | | |||||||||  |||  ||||||||||||    
T  19222414 aaaataaccaacacttctttcttctctatctcttctatctgtctcttataccaaagaacctatcaaatcaact 19222486  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 45059251 - 45059316
Alignment:
Q  34 aaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaa 99  Q
    ||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||| |||||||    
T  45059251 aaataatcaacacttctctcttccctatttcttctatctttctcttataccaatcaacccatcaaa 45059316  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 18370975 - 18371047
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaat 100  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||||| |||  ||||||||    
T  18370975 ttttaaaaataaacaacacttctctcttctctatttcttctatctttctcttataccaaacaatccatcaaat 18371047  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 24695853 - 24695804
Alignment:
Q  54 ttctctatttcttctatctttttgttataccaatcaacacatcaaatcaa 103  Q
    ||||||||||||||||||||| | |||||||||||||  |||||||||||    
T  24695853 ttctctatttcttctatctttctcttataccaatcaatccatcaaatcaa 24695804  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 39692532 - 39692565
Alignment:
Q  32 aaaaataatcaacacttctcttttctctatttct 65  Q
    ||||||||||||||||||||| ||||||||||||    
T  39692532 aaaaataatcaacacttctctcttctctatttct 39692565  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 53872 - 53800
Alignment:
Q  33 aaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaact 105  Q
    ||||||| |||||||||| | |||||||| | |||||||| | | ||||||||| ||||  ||||||||||||    
T  53872 aaaataaccaacacttctttcttctctatcttttctatctgtctcttataccaaacaacctatcaaatcaact 53800  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 1156958 - 1157031
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||||| | ||||||||| | | ||||||||||    
T  1156958 ttttaaaaataaccaacacttctctcttctctatttcttctctctttctcttataccaaactatacatcaaatc 1157031  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 264
Target Start/End: Original strand, 28591172 - 28591243
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtcagg-atcaaagtgactatttactctttt 264  Q
    |||||| |||||||| |||||||| ||||||||| | |||||||||| |||||||||||||||| |||||||    
T  28591172 ttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcagggatcaaagtgactatttgctctttt 28591243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 14891201 - 14891264
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtca-ggatcaaagtgactattt 256  Q
    |||||||||||||||||||||||| ||||||||| | |||||| | ||| ||||||||||||||    
T  14891201 ttaatcatgagtcagagacctatgtgacagcgaggtgcagagtgagggaccaaagtgactattt 14891264  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 12464207 - 12464280
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    ||||||| ||||||||||||||||| || |||||||||  | ||| | | ||| ||||| ||||||||||||||    
T  12464207 ttttaaacataatcaacacttctctcttttctatttctcttctctctcttttaaaccaaacaacacatcaaatc 12464280  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 17888266 - 17888335
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaact 105  Q
    |||||||||| |||| | |||||||| |||||| ||||| | ||||||||| ||||  ||||||||||||    
T  17888266 ataatcaacatttctttcttctctatctcttctttctttctcttataccaaacaacctatcaaatcaact 17888335  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 35106148 - 35106190
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctat 70  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  35106148 ttttaaaaataatcaacacttcttttttctctatttcttctat 35106190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 39121283 - 39121218
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    ||||||||||||||||| || |||||||||| | ||||| | ||||||||| |||| |||||||||    
T  39121283 ataatcaacacttctctcttttctatttcttttctctttctcttataccaaacaacccatcaaatc 39121218  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 54574490 - 54574421
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtcagg-atcaaagtgactatttactctt 262  Q
    |||||| ||||||||||||||||| ||||||||||| |||||| ||| | |||| ||||||||| |||||    
T  54574490 ttaatcctgagtcagagacctatgtgacagcgagatgcagagtgaggaagcaaaatgactatttgctctt 54574421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 50135782 - 50135846
Alignment:
Q  37 taatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    |||||||||||||| | ||||||||||||||||||||| | || |||||| |||  |||||||||    
T  50135782 taatcaacacttctttcttctctatttcttctatctttcttttctaccaaacaatccatcaaatc 50135846  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 8718762 - 8718692
Alignment:
Q  31 taaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    ||||| |||||||||||||| | | | |||||||| |||||||| | ||| | ||||||||||||||||||    
T  8718762 taaaactaatcaacacttctatctcccctatttctcctatctttctcttaaatcaatcaacacatcaaatc 8718692  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 29980346 - 29980382
Alignment:
Q  234 agtcaggatcaaagtgactatttactcttttcttaat 270  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  29980346 agtcaggatcaaagtgactatttactcattttttaat 29980382  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 10365093 - 10365020
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaactttat 109  Q
    ||||||||||||||||| ||||||||||||| | ||||| | ||||||||| |||  ||||||||| |||||||    
T  10365093 ataatcaacacttctctcttctctatttcttttctctttctcttataccaaacaatccatcaaatctactttat 10365020  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 265
Target Start/End: Complemental strand, 6467787 - 6467756
Alignment:
Q  234 agtcaggatcaaagtgactatttactcttttc 265  Q
    ||||||||||||||||||||||||||||||||    
T  6467787 agtcaggatcaaagtgactatttactcttttc 6467756  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 17772852 - 17772894
Alignment:
Q  32 aaaaataatcaacacttctcttttctctatttcttctatcttt 74  Q
    |||| |||||||||||||| | |||||||||||||||||||||    
T  17772852 aaaagtaatcaacacttctttcttctctatttcttctatcttt 17772894  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 38587228 - 38587147
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaactttat 109  Q
    ||||||||||||||||||||||||| ||||| ||||||  | ||||| | ||||||||| ||  ||||||||||| ||||||    
T  38587228 ttttaaaaataatcaacacttctctcttctcaatttctcatctctttcttttataccaaacactacatcaaatcatctttat 38587147  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 13863286 - 13863205
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaactttat 109  Q
    ||||||||||||||||||||||||| ||||| |||| |  | ||||| | ||||||||| ||  ||||||||||| ||||||    
T  13863286 ttttaaaaataatcaacacttctctcttctcaatttttcatctctttcttttataccaaacactacatcaaatcatctttat 13863205  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 42578470 - 42578520
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaa 86  Q
    |||||||| |||||||| ||||||||||||| ||||||| | |||||||||    
T  42578470 ataatcaaaacttctctcttctctatttcttttatctttctcttataccaa 42578520  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 19933651 - 19933596
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttatac 83  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||| | ||||||    
T  19933651 ttttaaaaataataaacaattctcttttctctatttcttctctctttctcttatac 19933596  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 19964790 - 19964735
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttatac 83  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||| | ||||||    
T  19964790 ttttaaaaataataaacaattctcttttctctatttcttctctctttctcttatac 19964735  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 44333204 - 44333141
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtca-ggatcaaagtgactattt 256  Q
    ||||||||||||||| |||||||| ||||||||| | |||||||| ||| ||||||||||||||    
T  44333204 ttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcagggaccaaagtgactattt 44333141  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 44062885 - 44062954
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaact 105  Q
    |||||||||| |||| | |||||||| |||||||||||| | ||||||||| ||||  ||||||||||||    
T  44062885 ataatcaacagttctttcttctctatctcttctatctttctcttataccaaacaacctatcaaatcaact 44062954  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 48646114 - 48646047
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtcagg-atcaaagtgactatttactc 260  Q
    |||||| |||||||| |||||||| ||||||||| | || ||||||| | ||||||||||||||||||    
T  48646114 ttaatcctgagtcagggacctatgtgacagcgaggtgcatagtcagggaccaaagtgactatttactc 48646047  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 48788730 - 48788793
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtca-ggatcaaagtgactattt 256  Q
    ||||| ||||||||| |||||||| ||||||||| | || ||||| ||||||||||||||||||    
T  48788730 ttaattatgagtcagggacctatgtgacagcgaggtgcaaagtcaaggatcaaagtgactattt 48788793  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 22644016 - 22643946
Alignment:
Q  31 taaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    |||||||||||||||||||| | ||||||||||||| ||| | | | || |||||| ||| ||||||||||    
T  22644016 taaaaataatcaacacttctttcttctctatttcttttatatctctcttctaccaaacaatacatcaaatc 22643946  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 7259742 - 7259811
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtcag-gatcaaagtgactatttactctt 262  Q
    |||||| ||| ||||||||| ||| ||||||||| |||| | |||| ||| |||||||||||||||||||    
T  7259742 ttaatcctgaatcagagacccatgtgacagcgagctacaaaatcagcgattaaagtgactatttactctt 7259811  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 11749295 - 11749222
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaactttat 109  Q
    |||||||||| |||||| ||||||||||||| | ||||| | || |||||| |||  ||||||||| |||||||    
T  11749295 ataatcaacatttctctcttctctatttcttatctctttctcttctaccaaacaatccatcaaatctactttat 11749222  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 20383814 - 20383887
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    |||||| |||||||||||||||||| ||||| ||||||| | ||| | | ||||||||| ||||  ||||||||    
T  20383814 ttttaacaataatcaacacttctctcttctcaatttcttttctctatctcttataccaaacaacctatcaaatc 20383887  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 42477446 - 42477402
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtca 238  Q
    |||||| |||||||||||||||||||||| |||| | ||||||||    
T  42477446 ttaatcctgagtcagagacctatgcgacaacgaggtgcagagtca 42477402  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 43457522 - 43457454
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtca-ggatcaaagtgactatttactct 261  Q
    |||||| |||||||| |||||||||||||||||| | |||| ||| |||  ||||||||||||| ||||    
T  43457522 ttaatcctgagtcagggacctatgcgacagcgagctgcagaatcagggactaaagtgactattttctct 43457454  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 5782479 - 5782433
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtcagg 240  Q
    |||||||||||||||||||||||| ||||||||| | ||||||||||    
T  5782479 ttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcagg 5782433  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 32665828 - 32665898
Alignment:
Q  194 ttaatcatgagtcagagacctatgcgacagcgagatacagagtca-ggatcaaagtgactatttactcttt 263  Q
    |||||||||||||||||||||||| ||||||||| | |||| ||| |||  ||||||||||||| ||||||    
T  32665828 ttaatcatgagtcagagacctatgtgacagcgagctgcagaatcagggactaaagtgactatttgctcttt 32665898  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 51048083 - 51048147
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaat 100  Q
    ||||||||||||||||| ||||||||||||| | ||||| | ||||||||| |||  ||||||||    
T  51048083 ataatcaacacttctctcttctctatttcttttctctttattttataccaaacaatccatcaaat 51048147  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 6918291 - 6918362
Alignment:
Q  36 ataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaacttt 107  Q
    |||||||| | |||| | |||||||| |||||||||||||| ||||| ||| ||||  ||||||||||||||    
T  6918291 ataatcaatatttctttcttctctatctcttctatctttttcttatatcaaacaacctatcaaatcaacttt 6918362  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 741100 - 741170
Alignment:
Q  31 taaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    ||||| ||||||  |||||| |||| ||| ||||||||||||||   ||||| ||||||||||||||||||    
T  741100 taaaattaatcagtacttcttttttatctgtttcttctatctttcacttatatcaatcaacacatcaaatc 741170  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 38674332 - 38674294
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttctt 66  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  38674332 ttttaaaaataatcaacacttctttcttctctatttctt 38674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 3936042 - 3935961
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatcaactttat 109  Q
    |||||||||||||||||| || ||| ||||| ||||||  | ||||| | ||||||||| ||  ||||||||||| ||||||    
T  3936042 ttttaaaaataatcaacaattatctcttctcaatttctcatctctttcttttataccaaacactacatcaaatcatctttat 3935961  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 8261526 - 8261559
Alignment:
Q  32 aaaaataatcaacacttctcttttctctatttct 65  Q
    ||||||||||||||||||||| ||||||||||||    
T  8261526 aaaaataatcaacacttctctcttctctatttct 8261559  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 32454530 - 32454603
Alignment:
Q  28 ttttaaaaataatcaacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    |||| |||||| ||||||||||||| ||||||||||||| ||||| | | ||||| ||| |||| || ||||||    
T  32454530 tttttaaaatagtcaacacttctctcttctctatttcttttatctctcttttataacaaacaacccaccaaatc 32454603  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 29232531 - 29232591
Alignment:
Q  41 caacacttctcttttctctatttcttctatctttttgttataccaatcaacacatcaaatc 101  Q
    |||||| ||||| ||||||||||||||| ||||| | ||||||||| |||  |||||||||    
T  29232531 caacacctctctcttctctatttcttctctctttctcttataccaaacaattcatcaaatc 29232591  T

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