View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_107 (Length: 365)
Name: NF1498_high_107
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_107 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 50141198 - 50140948
Alignment:
| Q |
18 |
agagtgagcgagacgaagtaggtgcggaggagggtggtggaggactgtggtaatagaaaggaaaataaggaacaattggattaggtggcggtggagttgg |
117 |
Q |
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| T |
50141198 |
agagtgagcgagacgaagtaggtgcggaggagggtggtggaggactgtggtaatagaaaggaaaataaggaacaattggattaggtggcggtggagttgg |
50141099 |
T |
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| Q |
118 |
accgtagtatctgttactaggtggagggtaataatagtaacttcctccgccactggatgacggaggaggtggaggtggagagtaatagtatgaacctcca |
217 |
Q |
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| T |
50141098 |
accgtagtatctgttactaggtgga-ggtaattatagtaacttcctccgccactggatgacggaggaggtggaggtggagagtaatagtatgaacctcca |
50141000 |
T |
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| Q |
218 |
cttgatccaccaccagaggaagtaggtggagaaggagggggagggcagttgt |
269 |
Q |
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| T |
50140999 |
cttgatccaccaccagaggaagtaggtggagaaggagggggagggcagttgt |
50140948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 298 - 346
Target Start/End: Complemental strand, 50140913 - 50140865
Alignment:
| Q |
298 |
agatggaacttgtttgcaggggttatcacaagcagcacacattgtgcac |
346 |
Q |
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| T |
50140913 |
agatggaactttgttgcaggggttatcacaagcagcacacattgtgcac |
50140865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 13407590 - 13407642
Alignment:
| Q |
53 |
ggtggaggactgtggtaatagaaaggaaaataaggaacaattggattaggtgg |
105 |
Q |
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| T |
13407590 |
ggtggtggagtgtggtaatagaaaggaaaataaggtacaataggatttggtgg |
13407642 |
T |
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