View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_11 (Length: 674)
Name: NF1498_high_11
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_11 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 15 - 537
Target Start/End: Complemental strand, 6249542 - 6249020
Alignment:
| Q |
15 |
caaagggatgtgtctaggggtgggcgtcgggcgggttcgggctcaaaacaccaaccctgcccaacccgcgggtgtcctacagaagcccatttcaacccct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249542 |
caaagggatgtgtctaggggtgggcgtcgggcgggttcgggctcaaaacaccaaccctgcccaacccgcgggtgtcctacagaagcccatttcaacccct |
6249443 |
T |
|
| Q |
115 |
tttttgttgcgggttcagcgggttacgggtcgtacggttcacgggttgggttaacgcgggtcagatgcagagaaaccttcagtgatttttccagcaactc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6249442 |
tttttgttgcgggttcagcgggttacgggtcgtacggttcacgggttgggttaacgcgggttagatgcagagaaaccttcagtgatttttccagcaactc |
6249343 |
T |
|
| Q |
215 |
taatttttattgaattgaaggtaacactttttggaagatccggacagaagaaatcataaattgtttggtttcttcttctttgttgtacatatcgagtaga |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249342 |
taatttttattgaagtgaaggtaacactttttggaagatccggacataagaaatcatgaattgtttggtttcttcttctttgttgtacatatcgagtaga |
6249243 |
T |
|
| Q |
315 |
agatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagctaagccttcaaaagtaaaaggaga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
6249242 |
agatcttgcatagatctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagctaagccttcaaaattaaagggaga |
6249143 |
T |
|
| Q |
415 |
atatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagtctatctctctgtggtgttggtag |
514 |
Q |
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| T |
6249142 |
atatagatgaaatgaaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagtctatctctctgtggtgttggtag |
6249043 |
T |
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| Q |
515 |
agtttcatagtaaaatcacatca |
537 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6249042 |
agtttcatagtaaaatcacatca |
6249020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 576 - 655
Target Start/End: Complemental strand, 6248981 - 6248902
Alignment:
| Q |
576 |
ggattaattcaaagcttgtgcttcgtaaaagtaaaaaattgaacttgatgactaccctatttcctatatacagtgtacta |
655 |
Q |
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| T |
6248981 |
ggattaattcaaagcttgtgcttcgtaaaagtaaaaaattgaacttgatgactaccctatttcctatatagagtgtacta |
6248902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 43064315 - 43064364
Alignment:
| Q |
41 |
tcgggcgggttcgggctcaaaacaccaaccctgcccaacccgcgggtgtc |
90 |
Q |
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| T |
43064315 |
tcgggcgggttcgggcccaaaaccccaatccagcccaactcgcgggtgtc |
43064364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 29 - 535
Target Start/End: Complemental strand, 43047684 - 43047178
Alignment:
| Q |
29 |
taggggtgggcgtcgggcgggttcgggctcaaaacaccaaccctgcccaacccgcgggtgtcctacagaagcccatttcaaccccttttttgttgcgggt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047684 |
taggggtgggcgtcgggcgggttcgggctcaaaacaccaacctagcccaacccgcgggtgtcctacataagcccatttcaaccccttttttgttgcgggt |
43047585 |
T |
|
| Q |
129 |
tcagcgggttacgggtcgtacggttcacgggttgggttaacgcgggtcagatgcagagaaaccttcagtgatttttccagcaactctaatttttattgaa |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43047584 |
ccagcgggttacgggtcgtacggttcacgggttgggttaacgcgggtcagatgcagagaaaccttcggtgatttttccagcaactctaatttttattgaa |
43047485 |
T |
|
| Q |
229 |
ttgaaggtaacactttttggaagatccggacagaagaaatcataaattgtttggtttcttcttctttgttgtacatatcgagtagaagatcttgcataga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43047484 |
gtgaaggtaacactttttggaagatccggacagaagaaatcatgaattgtttggtttcttcttctttgttgtacatatcgagtagaagatcttgcataga |
43047385 |
T |
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| Q |
329 |
tctaagacagtggcatttgaaattgatggaattctctgttttacatagacaacaatggaagctaagccttcaaaagtaaaaggagaatatagatgaaatg |
428 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
43047384 |
tctaagacagtggcatttgaaactgatggaattctctgttttacatagacaacaatggaagctaagccttcaaaattaaaaggagaatatggatgaaatg |
43047285 |
T |
|
| Q |
429 |
aaatgaaggagatggatcacatgatttgtattctttattttttctaaagagtgataccatagtctatctctctgtggtgttggtagagtttcatagtaaa |
528 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43047284 |
aaatgaaggagatggatcacatgatttgtattcttcattttttctaaagagtgataccatagtctgtctctctgtggtgttggtagagtttcatagtaaa |
43047185 |
T |
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| Q |
529 |
atcacat |
535 |
Q |
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||||||| |
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| T |
43047184 |
atcacat |
43047178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 603 - 655
Target Start/End: Complemental strand, 43032906 - 43032854
Alignment:
| Q |
603 |
aaagtaaaaaattgaacttgatgactaccctatttcctatatacagtgtacta |
655 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43032906 |
aaagtaaaaatctgaacttgatggctaccctatttcctatatacagtgtacta |
43032854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 41120884 - 41120828
Alignment:
| Q |
29 |
taggggtgggcgtcgggcgggttcgggctcaaaacaccaaccctgcccaacccgcgg |
85 |
Q |
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| T |
41120884 |
taggggtggacatcgggcgggttcgggtccaaagcacccacccagcccaacccgcgg |
41120828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 102265 - 102321
Alignment:
| Q |
29 |
taggggtgggcgtcgggcgggttcgggctcaaaacaccaaccctgcccaacccgcgg |
85 |
Q |
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||||||||| | ||||||||||||||| |||| |||| |||| ||||||||||||| |
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| T |
102265 |
taggggtggacatcgggcgggttcgggtccaaagcacccacccagcccaacccgcgg |
102321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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