View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_113 (Length: 359)
Name: NF1498_high_113
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_113 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 31134420 - 31134718
Alignment:
| Q |
19 |
cacagatgaaacctttgtaagctatcaatcttattttgtttcattctaaaatattctgagtacaatgaggtcaaacttaatgttctggtcttcatgagaa |
118 |
Q |
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| T |
31134420 |
cacagatgaaacctttgtaagctatcaatcttattttgtttcattctaaaatattctgagtacaatgaggtcaaacttaatgttctggtcttcatgagaa |
31134519 |
T |
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| Q |
119 |
attcttgtataaatgtcagacacacaaattacgtgtactaagtgaagacagacaaaacagccaaaacagcaacttctgtttaagagaagacagacaaaac |
218 |
Q |
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| T |
31134520 |
attcttgtataaatgtcagacac--aaattacgtgcactaagtgaagacagacaaaacagccaaaacagcaacttctgtttaagagaagacagacaaaac |
31134617 |
T |
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| Q |
219 |
agccatcaagaatggttaaatatattgttagtttataaaatttgaaaatttcattcgtgtaatttattaaaaaacttatttaagctaaacttattcgtgt |
318 |
Q |
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| T |
31134618 |
agccatcaagaatggttaaatatattgttagtttataaaatttgaaaatttcattcgtgtaatttataaaaaaacttatttaagctaaacttattcgtgt |
31134717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 31134726 - 31134761
Alignment:
| Q |
310 |
tattcgtgtaaaacaacaccggtgcgcaacattttt |
345 |
Q |
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| T |
31134726 |
tattcgtgtaaaacaacaccggtgcgcaacattttt |
31134761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 40634691 - 40634750
Alignment:
| Q |
103 |
ctggtcttcatgagaaattcttgtataaatgtcagaca-cacaaattacgtgtactaagt |
161 |
Q |
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| T |
40634691 |
ctggccttcatgagaaattcttgtataaatgtcggataccacaaattatgcgtactaagt |
40634750 |
T |
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