View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_117 (Length: 357)
Name: NF1498_high_117
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_117 |
 | |
|
| [»] scaffold0558 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
| [»] scaffold0337 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0558 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: scaffold0558
Description:
Target: scaffold0558; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 3979 - 3641
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3979 |
taatgaaagtaaacactaatttaaaacctgagagaagtacataatactaacctaatggccgatattgattgtttgttcggtaagttgtatctaaactgat |
3880 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
3879 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgttttctgcagcatcaacttggatatcatagtaaaaa |
3780 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3779 |
gatggtttcgagagagcttcatttctaaagaattcttgaattatagttgcttcaccaaccaccatctccttttggcgaattgtcattagatagttcttta |
3680 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3679 |
agtccgaaaaccgaaaaggaagattctccgtgcctccaa |
3641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 28445 - 28107
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28445 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
28346 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28345 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
28246 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
28146 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
28145 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
28107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 34401142 - 34400804
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34401142 |
taatgaaagtaaacactaatttaaaatctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
34401043 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34401042 |
gacatcaccaaatagagaataatctagttgcataattccatttgccaaaaaaatgctagttatgtcttctgcagcatcaacttggatatcatagtaaaaa |
34400943 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34400942 |
gatggtttcgagagagcttcatttctaaagaattcttgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
34400843 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
34400842 |
agtccgaaaatcgaaaaggaagattctccgtgcctccaa |
34400804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 22040707 - 22041045
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22040707 |
taatgaaagtaaacacttattaaaaacctgagagaagtaaaagatactaacctaatggtcgatattgattgtttgttcggtaagttgtatcaaaactgat |
22040806 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22040807 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
22040906 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22040907 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
22041006 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
22041007 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
22041045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 28120933 - 28120594
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28120933 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatggccgatattgattgtttgttcgataagttgtatcaaaactgat |
28120834 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
28120833 |
gacatcaccaaatagagaataatccagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcaacatcaacttggatatcatagtaaaaa |
28120734 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttc-ttt |
299 |
Q |
| |
|
|||| ||||||||||||||||| | ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
28120733 |
gatggtttcgagagagcttcatttataaagaattcttgaattacagttgcttcaccaactaccatctccttttgacgaattgtcattagatagttctttt |
28120634 |
T |
|
| Q |
300 |
aagttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
28120633 |
aagtctgaaaaccgaaaaggaagattctccgtacctccaa |
28120594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 166358 - 166020
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
166358 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
166259 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
166258 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
166159 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
166158 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
166059 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
166058 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
166020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 170300 - 169962
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
170300 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatggccgatattgattgattgttcggtaagttgtatcaaaactgat |
170201 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
170200 |
gacatcaccaaatagagaataatccagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatactaaaaa |
170101 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
170100 |
gatggtttcgagagagcttcatttctaaagaattattgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
170001 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
170000 |
agtctgaaaatcgaaaaggaagattctccgtacctccaa |
169962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 14498924 - 14498585
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14498924 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaaccaaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
14498825 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaa-tgctagctatgtcttttgcagcatcaacttggatatcatagtaaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| || |
|
|
| T |
14498824 |
gacatcgccaaatagagaataatctagttgcataattccatctgcccaaaaaaatgctagctatgtcttctgcagaatcaacttggatatcatagtataa |
14498725 |
T |
|
| Q |
200 |
agatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttt |
299 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14498724 |
agatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaacaaccatctccttttgacgaattgtcattagatagttcttt |
14498625 |
T |
|
| Q |
300 |
aagttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14498624 |
aagtccgaaaaccgaaaaggaagattctacgtgcctccaa |
14498585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 54754136 - 54753798
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54754136 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatgggcgatattgattgtttgttcggtaagttgtatcaaaactgat |
54754037 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54754036 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
54753937 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54753936 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttaacgaattgtcattagatagttcttta |
54753837 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
54753836 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
54753798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 128838 - 129176
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
128838 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatgggcgatattgattgtttgttcggtaagttgtatcaaaactgat |
128937 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
128938 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
129037 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
129038 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
129137 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
129138 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
129176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 4721278 - 4721616
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4721278 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatgggcgatattgattgtttgttcggtaagttgtatcaaaactgat |
4721377 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4721378 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
4721477 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4721478 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
4721577 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4721578 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
4721616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10561481 - 10561406
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgt |
76 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561481 |
taatgaaagtaaacactaatttaaaacctgagagaagtataaaatactaacctaatggccgatattgattgtttgt |
10561406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 21175869 - 21176207
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21175869 |
taattaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
21175968 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21175969 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
21176068 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21176069 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
21176168 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
21176169 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
21176207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 44351041 - 44351379
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44351041 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatgggcgatattgattgtttgttcggtaagttgtatcaaaactgat |
44351140 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44351141 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
44351240 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44351241 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
44351340 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
44351341 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
44351379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 3927043 - 3926932
Alignment:
| Q |
228 |
aagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttctttaagttcgaaaaccgaaaaggaagattct |
327 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3927043 |
aagaatttttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttctttaagtccgaaaaccgaaaaggaagattct |
3926944 |
T |
|
| Q |
328 |
ccgtgcctccaa |
339 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3926943 |
ccgtgcctccaa |
3926932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 11972748 - 11972410
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11972748 |
taatgaaagtaaacactaattaaaaacttgagagaagtaaaagatactaacctaatggccgatattgattgtttgatcggtaagttgtatcaaaactgat |
11972649 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11972648 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
11972549 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11972548 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
11972449 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
11972448 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
11972410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 1376651 - 1376713
Alignment:
| Q |
277 |
gaattgtcattagatagttctttaagttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||| |
|
|
| T |
1376651 |
gaattgttattagatagttctttaagtctgaaaatcgaaaaggaagattctatgtgcctccaa |
1376713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 17059809 - 17060147
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17059809 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
17059908 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
17059909 |
gacatcaccaaatagagaataatccagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcatcatcaacttggatatcatagtaaaaa |
17060008 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17060009 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagtagcttcaccaactaccatctccttttgacgaattctcattagatagttcttta |
17060108 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
17060109 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
17060147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 17592848 - 17592510
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17592848 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatggaagatattgattatttgttcggtaagttgtatcaaaactgat |
17592749 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17592748 |
gacatcaccaaatagagaataatcaagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
17592649 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17592648 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagtagcttcaccaactaccatctccttttgacgaattatcattagatagttcttta |
17592549 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
17592548 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
17592510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 39 - 339
Target Start/End: Complemental strand, 17223369 - 17223070
Alignment:
| Q |
39 |
acaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgatgacatcgccaaatagagaataatctagttgcataattt |
138 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |
|
|
| T |
17223369 |
acaaaatac-aacataatggccgatattgattgtttgttccgtaagttgtatcaaaactgatgacatcaccaaatagagaataatccagttgcataaatc |
17223271 |
T |
|
| Q |
139 |
catctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaagatgatttcgagagagcttcatatctaaagaattattg |
238 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
17223270 |
catctgcccaaaaaatgctacctatgtcttcttcagcatcaacttggatatcatagtaaaaagatggtttcgagagagcttcatttctaaagaattcttg |
17223171 |
T |
|
| Q |
239 |
aattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttctttaagttcgaaaaccgaaaaggaagattctccgtgcctcca |
338 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
17223170 |
aattacagttgcttcaccaacaaccatctccttatgacgaattgtcattagatagttctttaagtctgaaaaccgaaaaggaagattctccatacctcca |
17223071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 17588267 - 17588211
Alignment:
| Q |
283 |
tcattagatagttctttaagttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
17588267 |
tcattagatagttctttaagtctgaaaaccgaaaaggaagattctccgtacctccaa |
17588211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 19843789 - 19843451
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19843789 |
taatgaaagtaaacactaattaaaaacctgagagaagtaaaagatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
19843690 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
19843689 |
gacatcaccaaatagagaataatccagttgcataattccatcttcccaaaaaatgctagctatgtcttctgtagcatcaacttggatatcatagtaaaaa |
19843590 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttcttta |
300 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19843589 |
gatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaactaccatctccttctgacgaattgtcattagatagttcttta |
19843490 |
T |
|
| Q |
301 |
agttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19843489 |
agtctgaaaaccgaaaaggaagattctccgtacctccaa |
19843451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 24408141 - 24408427
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24408141 |
taatgaaagtaaacactaatttaaaatctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
24408240 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24408241 |
gacatcaccaaatagagaataatctagttgcataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaa |
24408340 |
T |
|
| Q |
201 |
gatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcatt |
287 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24408341 |
gatagtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcatt |
24408427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 132 - 339
Target Start/End: Complemental strand, 37223003 - 37222796
Alignment:
| Q |
132 |
ataatttcatctgcccaaaaaatgctagctatgtcttttgcagcatcaacttggatatcatagtaaaaagatgatttcgagagagcttcatatctaaaga |
231 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37223003 |
ataattccatctgcccaaaaaatgctagctatgtcttctgcagcatcaacttggatatcatagtaaaaagatggtttcgagagagcttcatttctaaaga |
37222904 |
T |
|
| Q |
232 |
attattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttctttaagttcgaaaaccgaaaaggaagattctccgt |
331 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37222903 |
attcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttctttaagtctgaaaaccgaaaaggaagattctccgt |
37222804 |
T |
|
| Q |
332 |
gcctccaa |
339 |
Q |
| |
|
||||||| |
|
|
| T |
37222803 |
acctccaa |
37222796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 210 - 339
Target Start/End: Original strand, 24409698 - 24409827
Alignment:
| Q |
210 |
gagagagcttcatatctaaagaattattgaattatagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttctttaagttcgaaa |
309 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24409698 |
gagagagcttcatttctaaagaattcttgaattacagttgcttcaccaaccaccatctccttttgacgaattgtcattagatagttctttaagtccgaaa |
24409797 |
T |
|
| Q |
310 |
accgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24409798 |
accgaaaaggaagattctccgtgcctccaa |
24409827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 151; Significance: 8e-80; HSPs: 4)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 161 - 339
Target Start/End: Complemental strand, 8412 - 8234
Alignment:
| Q |
161 |
tatgtcttttgcagcatcaacttggatatcatagtaaaaagatgatttcgagagagcttcatatctaaagaattattgaattatagttgcttcaccaacc |
260 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
8412 |
tatgtcttctgcagcatcaacttggatatcatagtaaaaagatggtttcgagagagcttcatttctaaagaattcttgaattacagttgcttcaccaacc |
8313 |
T |
|
| Q |
261 |
accatctccttttgacgaattgtcattagatagttctttaagttcgaaaaccgaaaaggaagattctccgtgcctccaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8312 |
accatctccttttgacgaattgtcattagatagttctttaagtccgaaaaccgaaaaggaagattcttcgtgcctccaa |
8234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 12009 - 11857
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatggccgatattgattgtttgttcggtaagttgtatcaaaactgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12009 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatagtaacctaatggctgatattgattgtttgttgggtaagttgtatcaaaactgat |
11910 |
T |
|
| Q |
101 |
gacatcgccaaatagagaataatctagttgcataatttcatctgcccaaaaaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11909 |
gacatcgccaaatagagaataatctagttgcataattccatctgcccaaaaaa |
11857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11812 - 11756
Alignment:
| Q |
1 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatg |
57 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11812 |
taatgaaagtaaacactaatttaaaacctgagagaagtacaaaatactaacctaatg |
11756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 11758 - 11691
Alignment:
| Q |
99 |
atgacatcgccaaatagagaataatctagttgcataatttcatctgcccaa-aaaatgctagctatgt |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
11758 |
atgacatcgccaaatagagaataatctagttgcataattccatctgcccaaaaaaatgctacctatgt |
11691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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