View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_121 (Length: 353)
Name: NF1498_high_121
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_121 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 2 - 353
Target Start/End: Complemental strand, 44561370 - 44561019
Alignment:
| Q |
2 |
tacaatgcatataatatgagcagaacaaaaaccgtgtgatttgaattcccttttgatttcgggatgtgaacaactgaacatgatttacattttccttgct |
101 |
Q |
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| T |
44561370 |
tacaatgcatataatatgagcagaacaaaaaccgtgtgatttgaattcccttttgatttcgggatgtgaacaactgaacatgatttgcattttccttgct |
44561271 |
T |
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| Q |
102 |
gaatgaatatcaaatgacaatacttgtttcttgtttggactcaaattacaaaacttcaatgaatacttgtgaattcttactaccctgaagttatgattct |
201 |
Q |
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| T |
44561270 |
gaatgaatatcaaatgacaatacttgtttcttgtttggactcaaattacaaaacttcaatgaatacttgtgaattcttactaccctgaagttatgattct |
44561171 |
T |
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| Q |
202 |
tatggagttgcgtacccatcctctaaagattaaaagatctattacgatgttggattttgatggttttgttatttccgagaatacagattactctggtggg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44561170 |
tatggagttgcgtacccatcctctaaagattaaaagatctattacgatgttggattttgatggttttgttatttccgagaatacagattactctggtggg |
44561071 |
T |
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| Q |
302 |
attatgatagcgtggaagcagggggtttggataattcttgctttataaaaga |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44561070 |
attatgatagcgtggaagcagggggtttggataattcttgctttatagaaga |
44561019 |
T |
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