View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_126 (Length: 347)
Name: NF1498_high_126
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_126 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5410571 - 5410779
Alignment:
| Q |
1 |
taattatttactactaaagtttcccatttcaatcatccttacctaaagtatgaataaatgcactactatatacagttagattcatgattgaaatgggact |
100 |
Q |
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| T |
5410571 |
taattatttactactaaagtttcccatttcaatcatccttacctaaagtatgaataaatgcactactatatacagttagattcatgattgaaatgggact |
5410670 |
T |
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| Q |
101 |
atcagcaacttgtcccatgattatcaatatcattgattaatgggacccttgaactcaaactactatatttccaagtctacttattcatcttattaaatcc |
200 |
Q |
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| T |
5410671 |
atcagcaacttgtcccatgattatcaatatcattgattaatgggacccttgaactcaaactactatatttccaagtccacttattcatcttattaaatcc |
5410770 |
T |
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| Q |
201 |
ttccctcct |
209 |
Q |
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||||||||| |
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| T |
5410771 |
ttccctcct |
5410779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 5410851 - 5410885
Alignment:
| Q |
297 |
taagatgaaagtgttgtccttgtgcatgaggtagt |
331 |
Q |
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| T |
5410851 |
taagatgaaagtgttgtccttgtgcatgaggtagt |
5410885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 5410542 - 5410570
Alignment:
| Q |
70 |
atacagttagattcatgattgaaatggga |
98 |
Q |
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| T |
5410542 |
atacagttagattcatgattgaaatggga |
5410570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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