View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_127 (Length: 346)

Name: NF1498_high_127
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_127
NF1498_high_127
[»] chr4 (22 HSPs)
chr4 (91-345)||(9302431-9302689)
chr4 (300-345)||(21023338-21023383)
chr4 (293-345)||(33359881-33359933)
chr4 (293-345)||(49039424-49039476)
chr4 (301-345)||(47416532-47416576)
chr4 (293-344)||(12585538-12585589)
chr4 (295-345)||(20610803-20610853)
chr4 (300-345)||(41492485-41492530)
chr4 (293-338)||(54854158-54854203)
chr4 (293-344)||(31480336-31480385)
chr4 (293-345)||(35230274-35230326)
chr4 (293-345)||(49743426-49743478)
chr4 (293-339)||(21664148-21664194)
chr4 (293-339)||(21672912-21672958)
chr4 (295-345)||(55967642-55967692)
chr4 (293-345)||(39293592-39293645)
chr4 (293-333)||(4419665-4419705)
chr4 (308-344)||(24039949-24039985)
chr4 (295-327)||(30565444-30565476)
chr4 (296-344)||(40051283-40051331)
chr4 (293-345)||(42758143-42758195)
chr4 (293-345)||(55677169-55677221)
[»] chr8 (22 HSPs)
chr8 (293-345)||(220341-220393)
chr8 (293-345)||(689496-689548)
chr8 (293-345)||(733964-734016)
chr8 (293-345)||(857860-857912)
chr8 (299-345)||(6325333-6325379)
chr8 (295-345)||(216128-216178)
chr8 (295-345)||(692688-692738)
chr8 (295-345)||(696897-696947)
chr8 (295-345)||(729751-729801)
chr8 (295-345)||(853646-853696)
chr8 (293-345)||(25470825-25470877)
chr8 (293-345)||(39208848-39208900)
chr8 (293-345)||(12926457-12926509)
chr8 (293-345)||(22438563-22438615)
chr8 (297-344)||(18546143-18546190)
chr8 (296-342)||(11900632-11900678)
chr8 (299-344)||(4604338-4604383)
chr8 (307-344)||(7345493-7345530)
chr8 (295-344)||(22847243-22847292)
chr8 (301-345)||(16935651-16935695)
chr8 (293-329)||(25408675-25408711)
chr8 (293-345)||(35779817-35779869)
[»] chr5 (21 HSPs)
chr5 (295-344)||(22687862-22687911)
chr5 (293-345)||(20186928-20186980)
chr5 (293-345)||(11246473-11246525)
chr5 (293-345)||(37986846-37986898)
chr5 (293-345)||(39684302-39684354)
chr5 (293-345)||(40384315-40384367)
chr5 (295-330)||(28768676-28768711)
chr5 (293-340)||(31280359-31280406)
chr5 (295-345)||(3535917-3535967)
chr5 (299-345)||(6291059-6291105)
chr5 (295-345)||(17137848-17137898)
chr5 (293-342)||(8934848-8934897)
chr5 (293-338)||(18535985-18536030)
chr5 (296-345)||(29561712-29561761)
chr5 (300-345)||(31556882-31556927)
chr5 (293-345)||(28537199-28537251)
chr5 (295-345)||(13862188-13862238)
chr5 (308-345)||(27006404-27006441)
chr5 (300-345)||(38128999-38129044)
chr5 (296-345)||(41539378-41539427)
chr5 (293-345)||(35813222-35813273)
[»] chr2 (25 HSPs)
chr2 (295-345)||(1244633-1244683)
chr2 (293-345)||(34107338-34107390)
chr2 (295-344)||(5029081-5029130)
chr2 (293-345)||(35352383-35352435)
chr2 (293-345)||(39334860-39334912)
chr2 (297-340)||(2394956-2394999)
chr2 (293-344)||(17896883-17896934)
chr2 (300-345)||(5807753-5807798)
chr2 (295-344)||(12206563-12206612)
chr2 (304-345)||(29896151-29896192)
chr2 (293-345)||(20942088-20942140)
chr2 (293-333)||(23664045-23664085)
chr2 (293-333)||(33124344-33124384)
chr2 (301-345)||(44487754-44487798)
chr2 (307-345)||(2057543-2057581)
chr2 (303-345)||(22355147-22355189)
chr2 (295-345)||(32677393-32677443)
chr2 (300-342)||(41305052-41305094)
chr2 (300-345)||(10602070-10602115)
chr2 (295-344)||(39118458-39118507)
chr2 (301-341)||(2971128-2971168)
chr2 (293-333)||(25463245-25463285)
chr2 (293-345)||(36345160-36345212)
chr2 (293-345)||(36413824-36413876)
chr2 (293-345)||(38581585-38581637)
[»] chr3 (23 HSPs)
chr3 (295-344)||(21248971-21249020)
chr3 (296-344)||(6054207-6054255)
chr3 (293-345)||(17262283-17262335)
chr3 (293-345)||(24130623-24130675)
chr3 (293-345)||(40160799-40160851)
chr3 (293-345)||(42665904-42665956)
chr3 (293-345)||(47497142-47497194)
chr3 (305-345)||(4045625-4045665)
chr3 (304-344)||(28951931-28951971)
chr3 (308-344)||(32080120-32080156)
chr3 (293-345)||(33533267-33533319)
chr3 (293-333)||(38571401-38571441)
chr3 (293-345)||(49299219-49299271)
chr3 (293-344)||(4009997-4010048)
chr3 (295-333)||(2995672-2995710)
chr3 (303-345)||(23025961-23026003)
chr3 (293-342)||(2903775-2903824)
chr3 (293-337)||(18399633-18399675)
chr3 (296-345)||(31680796-31680844)
chr3 (293-345)||(36763495-36763548)
chr3 (293-345)||(3993686-3993738)
chr3 (293-333)||(40956666-40956706)
chr3 (293-341)||(51493666-51493714)
[»] scaffold0119 (1 HSPs)
scaffold0119 (293-345)||(1103-1155)
[»] chr7 (25 HSPs)
chr7 (295-343)||(2567813-2567861)
chr7 (293-345)||(24579265-24579317)
chr7 (300-344)||(44409265-44409309)
chr7 (300-345)||(26734257-26734302)
chr7 (294-344)||(38328547-38328597)
chr7 (300-345)||(1649216-1649261)
chr7 (293-345)||(11808102-11808155)
chr7 (293-345)||(32309127-32309179)
chr7 (301-345)||(35498461-35498505)
chr7 (293-344)||(3246468-3246519)
chr7 (295-345)||(8214174-8214222)
chr7 (293-340)||(10020448-10020495)
chr7 (294-345)||(10958097-10958148)
chr7 (295-345)||(22965941-22965989)
chr7 (293-340)||(41000829-41000876)
chr7 (295-333)||(23470482-23470520)
chr7 (293-338)||(3481148-3481193)
chr7 (293-345)||(17997719-17997769)
chr7 (293-322)||(27726348-27726377)
chr7 (296-333)||(38363235-38363272)
chr7 (300-340)||(5773200-5773240)
chr7 (296-344)||(32534575-32534623)
chr7 (294-345)||(36343359-36343411)
chr7 (293-345)||(42976579-42976631)
chr7 (293-345)||(43635652-43635704)
[»] chr6 (22 HSPs)
chr6 (293-345)||(4844207-4844259)
chr6 (293-345)||(26669638-26669690)
chr6 (293-345)||(20149958-20150010)
chr6 (293-345)||(22182822-22182874)
chr6 (295-345)||(17347318-17347368)
chr6 (308-345)||(7234029-7234066)
chr6 (293-345)||(9438366-9438416)
chr6 (295-338)||(3243887-3243930)
chr6 (301-340)||(32372513-32372552)
chr6 (293-323)||(9031853-9031883)
chr6 (295-341)||(10455811-10455857)
chr6 (298-344)||(29204853-29204899)
chr6 (302-344)||(34524940-34524982)
chr6 (293-345)||(6530185-6530235)
chr6 (301-345)||(9422897-9422942)
chr6 (308-345)||(19680242-19680279)
chr6 (302-338)||(1395578-1395614)
chr6 (301-345)||(3037576-3037620)
chr6 (293-345)||(6455517-6455569)
chr6 (293-344)||(8176061-8176113)
chr6 (293-345)||(12291234-12291286)
chr6 (301-345)||(17305581-17305624)
[»] chr1 (36 HSPs)
chr1 (301-345)||(195108-195152)
chr1 (301-345)||(9769567-9769611)
chr1 (295-345)||(41677124-41677174)
chr1 (300-345)||(3341722-3341767)
chr1 (295-344)||(23750215-23750264)
chr1 (293-345)||(13941383-13941435)
chr1 (293-345)||(19866539-19866591)
chr1 (293-345)||(33844681-33844733)
chr1 (293-345)||(33949245-33949297)
chr1 (293-345)||(38028601-38028653)
chr1 (301-345)||(43020675-43020719)
chr1 (293-344)||(9931152-9931203)
chr1 (293-344)||(23973461-23973512)
chr1 (295-345)||(2643796-2643846)
chr1 (295-345)||(9768790-9768840)
chr1 (295-345)||(12553258-12553308)
chr1 (295-345)||(50199457-50199507)
chr1 (308-345)||(27654999-27655036)
chr1 (295-344)||(32609233-32609282)
chr1 (293-342)||(35424207-35424256)
chr1 (293-345)||(1576100-1576152)
chr1 (300-344)||(2903013-2903057)
chr1 (296-340)||(4511507-4511551)
chr1 (293-345)||(9410307-9410359)
chr1 (301-345)||(9976371-9976415)
chr1 (293-345)||(50147588-50147640)
chr1 (293-344)||(8904319-8904370)
chr1 (295-345)||(21884639-21884687)
chr1 (302-344)||(18003881-18003923)
chr1 (296-326)||(18646769-18646799)
chr1 (308-345)||(11238022-11238059)
chr1 (308-345)||(48260183-48260220)
chr1 (299-339)||(3261928-3261968)
chr1 (301-345)||(16182873-16182917)
chr1 (301-345)||(41998161-41998205)
chr1 (308-344)||(49632352-49632388)
[»] scaffold0002 (1 HSPs)
scaffold0002 (295-344)||(440464-440513)
[»] scaffold0129 (1 HSPs)
scaffold0129 (293-344)||(7121-7172)
[»] scaffold0039 (1 HSPs)
scaffold0039 (301-343)||(25457-25499)
[»] scaffold0172 (1 HSPs)
scaffold0172 (293-344)||(33448-33500)
[»] scaffold0054 (1 HSPs)
scaffold0054 (301-345)||(67225-67269)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 91 - 345
Target Start/End: Original strand, 9302431 - 9302689
Alignment:
Q  91 acaaccaacattcttcctctatcctcccaatcaggtcagtcactcttaatgctttctttgatttattttatgttcttcaattcattttttaa---catat 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  9302431 acaaccaacattcttcctctatcctcccaatcaggtcagtcactcttaatgctttctttgatttattttatgttcttcaattcattttttaatcacatat 9302530  T
Q  188 atatagtagcttaatctataattatttaatatagtagttcataatttagtaatagtgtgggtagttggtatgtagagtgtgcgagtgtagtaaac-nnnn 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||         
T  9302531 atatagtagcttaatctataattatttaatatagtagttcataatttagtaatagtgtgggtagttggtatatagagtgtgcgagtgtactaaacttttt 9302630  T
Q  287 nnnnnnaagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
          ||||||||||||| ||| ||||||||||||||||||||||| | |||||||||    
T  9302631 tttgtcaagtagtctagtgattaaaattcacctttttcaaggtgaataaatggggtgtc 9302689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 21023338 - 21023383
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  21023338 ctagtggttagaattcacctttttcaaggtgaataagtggggtgtc 21023383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 33359933 - 33359881
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||||||||    
T  33359933 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 33359881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 49039424 - 49039476
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||||||||    
T  49039424 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 49039476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 47416576 - 47416532
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  47416576 tagtggttagaattcacctttttcaaagtgaataagtggggtgtc 47416532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 12585538 - 12585589
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||| |||||    
T  12585538 aagtagtctagtggctagaattcacctttttcaagatgaataagtgaggtgt 12585589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 20610853 - 20610803
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||| |||||||||||||||| ||||||||| |||||| ||||    
T  20610853 gtagtctagtggctagaattcaccttttttaaggtgaataagtgggatgtc 20610803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 41492485 - 41492530
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||||||||||||||||||| ||| |||||||||||    
T  41492485 ctagtggctagaattcacctttttcaaggtaaataagtggggtgtc 41492530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 54854158 - 54854203
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtg 338  Q
    |||||||||||||| |||||||||| ||||||||||||||| ||||    
T  54854158 aagtagtctagtggctagaattcacttttttcaaggtgaataagtg 54854203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 31480385 - 31480336
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||||||||||||||||||||||| ||||  ||||||||| ||||||||||    
T  31480385 aagtagtctagtggttagaattcacgtttt--aaggtgaataagtggggtgt 31480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 35230274 - 35230326
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| || ||||||||| ||||||||| ||| |||||||||||    
T  35230274 aagtagtctagtggctaaaattcacctatttcaaggtaaataagtggggtgtc 35230326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 49743478 - 49743426
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| |||| ||||||    
T  49743478 aagtagtttagtggttaaaattcacctttttcaaggtaaataagtgaggtgtc 49743426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 21664194 - 21664148
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtgg 339  Q
    |||||| |||||||||||||||||||||| ||||| ||||| |||||    
T  21664194 aagtagcctagtggttagaattcacctttctcaagatgaataagtgg 21664148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 21672958 - 21672912
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtgg 339  Q
    |||||| |||||||||||||||||||||| ||||| ||||| |||||    
T  21672958 aagtagcctagtggttagaattcacctttctcaagatgaataagtgg 21672912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 55967692 - 55967642
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||||||||||||||||| ||||||| | |||| |||||||||||    
T  55967692 gtagcctagtggttagaattcaccattttcaatgcgaataagtggggtgtc 55967642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 39293645 - 39293592
Alignment:
Q  293 aagtagtctagtggttagaattcacct-ttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||| | |||||||||||| |||||||||||||| |||||| ||||    
T  39293645 aagtagtctagtagctagaattcaccttttttcaaggtgaataagtgggatgtc 39293592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 4419665 - 4419705
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    ||||||| ||| ||||||||||||| |||||||||||||||    
T  4419665 aagtagtgtagcggttagaattcacttttttcaaggtgaat 4419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 24039985 - 24039949
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||||||||||||||| |||| |||||    
T  24039985 tagaattcacctttttcaaggtgaataagtgaggtgt 24039949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Complemental strand, 30565476 - 30565444
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaag 327  Q
    ||||||||||||||||||||| |||||||||||    
T  30565476 gtagtctagtggttagaattctcctttttcaag 30565444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 40051283 - 40051331
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||| |||||||||||||||  |||||| ||||||||| ||||||||||    
T  40051283 tagtatagtggttagaattcttcttttttaaggtgaataagtggggtgt 40051331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 42758143 - 42758195
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||||||| || |||||| |||||| ||||||||| |||||||||||    
T  42758143 aagtggtctagtggctataattcatctttttgaaggtgaataagtggggtgtc 42758195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 55677221 - 55677169
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||||||||||| | |||||| |||||| ||||| |||||    
T  55677221 aagtagtttagtggttagaattcacttatttcaaagtgaataagtggagtgtc 55677169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 220341 - 220393
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  220341 aagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtc 220393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 689496 - 689548
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  689496 aagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtc 689548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 733964 - 734016
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  733964 aagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtc 734016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 857860 - 857912
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  857860 aagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtc 857912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 6325379 - 6325333
Alignment:
Q  299 tctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  6325379 tctagtggctagaattcacctttttcaaggtgaatgagtggggtgtc 6325333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 216128 - 216178
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  216128 gtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtc 216178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 692688 - 692738
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  692688 gtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtc 692738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 696897 - 696947
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  696897 gtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtc 696947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 729751 - 729801
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  729751 gtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtc 729801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 853646 - 853696
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||| |||||||||||||||||||||| |||| ||||||    
T  853646 gtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtc 853696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 25470825 - 25470877
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| ||||||||||||| |||||||||||| | |||||||||    
T  25470825 aagtagtctagtggctagaattcaccttcttcaaggtgaataaatggggtgtc 25470877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 39208848 - 39208900
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| |||||||||||||||| ||||||||| |||| ||||||    
T  39208848 aagtagtctagtggctagaattcacctttttaaaggtgaataagtgaggtgtc 39208900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 12926457 - 12926509
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| ||||||| |||||||||||| ||||| |||| ||||||    
T  12926457 aagtagtctagtggctagaatttacctttttcaagatgaataagtgaggtgtc 12926509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 22438563 - 22438615
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||| ||||||| ||||||||||||||||| ||||||||| ||||| |||||    
T  22438563 aagtaatctagtgattagaattcaccttttttaaggtgaataagtggagtgtc 22438615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 344
Target Start/End: Complemental strand, 18546190 - 18546143
Alignment:
Q  297 agtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||| |||||| ||||||||| ||||||||||| ||||||||||    
T  18546190 agtctagttgttagagttcacctttgtcaaggtgaataagtggggtgt 18546143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 11900678 - 11900632
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggggt 342  Q
    |||| |||||| |||||||||||||||||||| ||||| ||||||||    
T  11900678 tagtttagtggctagaattcacctttttcaagatgaataagtggggt 11900632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 4604338 - 4604383
Alignment:
Q  299 tctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||||||| |||||| ||||||||| ||||| ||||    
T  4604338 tctagtggttagaattcatcttttttaaggtgaataagtggagtgt 4604383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 7345530 - 7345493
Alignment:
Q  307 ttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  7345530 ttagaattcaccttttttaaggtgaataagtggggtgt 7345493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 22847243 - 22847292
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||| ||||| |||||||||||||||| ||||||||| |||| |||||    
T  22847243 gtagtcaagtggctagaattcaccttttttaaggtgaataagtgaggtgt 22847292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 16935695 - 16935651
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||| |||||| ||||||||| ||||| |||||||||||    
T  16935695 tagtggttaggattcacatttttcaagttgaataagtggggtgtc 16935651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 25408675 - 25408711
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggt 329  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  25408675 aagtagtctagtggctagaattcaccttcttcaaggt 25408711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 35779869 - 35779817
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||| || ||||||||| |||||||||| ||||| |||||||||||    
T  35779869 aagtagtttagaggctagaattcatctttttcaagatgaataagtggggtgtc 35779817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 22687862 - 22687911
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22687862 gtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgt 22687911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 20186980 - 20186928
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  20186980 aagtagtctagtggttataattcacttttttcaaggtgaataagtggggtgtc 20186928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 11246473 - 11246525
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| |||||||||||||||||||| ||||| |||||| ||||    
T  11246473 aagtagtctagtggctagaattcacctttttcaagctgaataagtgggatgtc 11246525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 37986846 - 37986898
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||| |||||||||||||||||||||||||| |||||| ||||    
T  37986846 aagtagcctagtggctagaattcacctttttcaaggtgaataagtgggatgtc 37986898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 39684354 - 39684302
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||    
T  39684354 aagtaatctagtggttagaattcaccttttttaaggtgaataagtgggatgtc 39684302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 40384367 - 40384315
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||| |||||||||||||||| ||||||||| |||||||||||    
T  40384367 aagtagtttagtggctagaattcaccttttttaaggtgaataagtggggtgtc 40384315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 28768711 - 28768676
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtg 330  Q
    ||||||||||||||||||||||||||||||||||||    
T  28768711 gtagtctagtggttagaattcacctttttcaaggtg 28768676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 31280359 - 31280406
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggg 340  Q
    |||||||||||||| ||||||||||||||||||||||| || ||||||    
T  31280359 aagtagtctagtgggtagaattcacctttttcaaggtggataagtggg 31280406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 3535917 - 3535967
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  3535917 gtagcctagtggttagaattcactttttttaaggtgaataagtggggtgtc 3535967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 6291105 - 6291059
Alignment:
Q  299 tctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||||| |||||| | |||||||||    
T  6291105 tctagtggttagaattcacctttttcaatgtgaataaatggggtgtc 6291059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 17137848 - 17137898
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||| |||||    
T  17137848 gtagcctagtggttagaattcacgtttttcaaggtgaataagtggagtgtc 17137898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 8934897 - 8934848
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggt 342  Q
    |||||||||| ||||||||||| |||||||| ||||||||| ||||||||    
T  8934897 aagtagtctaatggttagaatttacctttttaaaggtgaataagtggggt 8934848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 18536030 - 18535985
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtg 338  Q
    ||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  18536030 aagtagtttagtggttagaattcacttttttcaaggtgaataagtg 18535985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 29561761 - 29561712
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||| ||||    
T  29561761 tagtttagtggttagaattcacctttttcaagatgaataagtgggatgtc 29561712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 31556927 - 31556882
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||    
T  31556927 ctagtggctagaattcacccttttcaaggtgaataagtggggtgtc 31556882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 28537251 - 28537199
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||| ||||||||||| ||||||| |||||| |||||||||||    
T  28537251 aagtagcctagtggctagaattcaccattttcaaagtgaataagtggggtgtc 28537199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 13862238 - 13862188
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| |||||||||||||||| |||||||||||  |||| |||||||||||    
T  13862238 gtagcctagtggttagaattctcctttttcaagaagaataagtggggtgtc 13862188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 27006441 - 27006404
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  27006441 tagaattcacctttttcaaggtgaataagtggagtgtc 27006404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 38128999 - 38129044
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||| | |||||||||||||| ||||| |||||    
T  38128999 ctagtggttagaattcatcattttcaaggtgaataagtggagtgtc 38129044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 41539427 - 41539378
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||  |||||||||||||||||||| | ||| |||||||||||    
T  41539427 tagtctagtgactagaattcacctttttcaagattaataagtggggtgtc 41539378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 35813222 - 35813273
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||| ||||||||||||||||||| | |||| |||||||||||    
T  35813222 aagtagcctagtggctagaattcacctttttcaaag-gaataagtggggtgtc 35813273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 1244683 - 1244633
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  1244683 gtagtctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 1244633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 34107390 - 34107338
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||||||||||    
T  34107390 aagtagtctagtggctagaattcacatttttcaaggtgaataagtggggtgtc 34107338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 5029081 - 5029130
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||||||||    
T  5029081 gtagtctagtgggtagaattcatctttttcaaggtgaataagtggggtgt 5029130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 35352383 - 35352435
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||  |||||||||| ||||||||||||||| |||||||||||    
T  35352383 aagtagtctagtgactagaattcacatttttcaaggtgaataagtggggtgtc 35352435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 39334860 - 39334912
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||| ||||    
T  39334860 aagtagtctagtggctagaattcacctttttcaaagtgaataagtgggatgtc 39334912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 2394956 - 2394999
Alignment:
Q  297 agtctagtggttagaattcacctttttcaaggtgaatgagtggg 340  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  2394956 agtctattggttagaattcacctttttcaaggtgaataagtggg 2394999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 17896934 - 17896883
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||    
T  17896934 aagtagtttagtggttagaattcacattttttaaggtgaataagtggggtgt 17896883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 5807753 - 5807798
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||| |||||||||||||||||||||||||||| |||||| ||||    
T  5807753 ctagtagttagaattcacctttttcaaggtgaataagtgggatgtc 5807798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 12206612 - 12206563
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||| ||||||| |||||||||||||||||||||||||| || |||||||    
T  12206612 gtagcctagtggctagaattcacctttttcaaggtgaataagcggggtgt 12206563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 29896151 - 29896192
Alignment:
Q  304 tggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||| |||||||||||||||| |||||||||||    
T  29896151 tggttagaattcatctttttcaaggtgaataagtggggtgtc 29896192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 20942088 - 20942140
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||  |||||||||| ||||||||||||||| |||| ||||||    
T  20942088 aagtagtctagtgactagaattcacttttttcaaggtgaataagtgaggtgtc 20942140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 23664085 - 23664045
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  23664085 aagtagtctagtgattagaattcacttttttcaaggtgaat 23664045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 33124344 - 33124384
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  33124344 aagtagtatagtggttagaattcaccttttttaaggtgaat 33124384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 44487754 - 44487798
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||    
T  44487754 tagtggttagaattcaccttttttaaggtgaataagtgggatgtc 44487798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 2057581 - 2057543
Alignment:
Q  307 ttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  2057581 ttagaattcaccttttttaaggtgaataagtggggtgtc 2057543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 22355189 - 22355147
Alignment:
Q  303 gtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||||||||||||| |||||||||| |||||||||||    
T  22355189 gtggctagaattcaccttttgcaaggtgaataagtggggtgtc 22355147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 32677443 - 32677393
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||  || |||||||||||||||| |||||| |||||||||||    
T  32677443 gtagtctagtgactataattcacctttttcaaagtgaataagtggggtgtc 32677393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 41305052 - 41305094
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggt 342  Q
    ||||||| | |||||||||||||||||||||||| ||||||||    
T  41305052 ctagtggctcgaattcacctttttcaaggtgaataagtggggt 41305094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 10602115 - 10602070
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||| ||||||||| |||||| |||||||||||    
T  10602115 ctagtggctagaattcatctttttcaaagtgaataagtggggtgtc 10602070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 39118507 - 39118458
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||| |||||||| ||||||| |||| |||| ||||||||||    
T  39118507 gtagtctagtggctagaattctccttttttaaggagaataagtggggtgt 39118458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 2971128 - 2971168
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtgggg 341  Q
    |||| |||||||||||||||||| ||||||||| |||||||    
T  2971128 tagttgttagaattcaccttttttaaggtgaataagtgggg 2971168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 25463245 - 25463285
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    |||||| |||||||||||||||||  |||||||||||||||    
T  25463245 aagtagcctagtggttagaattcatttttttcaaggtgaat 25463285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 36345160 - 36345212
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||| ||||| |||||||||||||| ||||| ||||| |||||    
T  36345160 aagtagtttagtggctagaactcacctttttcaagatgaataagtggagtgtc 36345212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 36413876 - 36413824
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||| ||| || |||||||||||||||| |||||| |||||||||||    
T  36413876 aagtagcctaatggctaaaattcacctttttcaaagtgaataagtggggtgtc 36413824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 38581585 - 38581637
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| |||||||||||||| ||||||||| ||| ||||| |||||| ||||    
T  38581585 aagtagcctagtggttagaatacaccttttttaagatgaataagtgggatgtc 38581637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 21248971 - 21249020
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  21248971 gtagtctagtggctagaattcacctttttcaaggtgaataagtggggtgt 21249020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 6054207 - 6054255
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||    
T  6054207 tagtctagtggttagaattcacctttttcaaggtgaataagtgaggtgt 6054255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 17262335 - 17262283
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| || || ||||||||||||||||||||||||||| |||||||||||    
T  17262335 aagtagtttaatgattagaattcacctttttcaaggtgaataagtggggtgtc 17262283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 24130675 - 24130623
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| ||| ||||| |||||||||||||||| |||||||||||    
T  24130675 aagtagtctagtggctagtattcaactttttcaaggtgaataagtggggtgtc 24130623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 40160851 - 40160799
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||| |||||||||||||||| ||||||||| |||||||||||    
T  40160851 aagtagcctagtggctagaattcacctttttaaaggtgaataagtggggtgtc 40160799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 42665904 - 42665956
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||| ||||||||||  ||||||||||||||| |||||||||||    
T  42665904 aagtagtctagtgattagaattcatttttttcaaggtgaataagtggggtgtc 42665956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 47497194 - 47497142
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||    
T  47497194 aagtagtttagtggttaaaattcaccttttttaaggtgaataagtggggtgtc 47497142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 4045625 - 4045665
Alignment:
Q  305 ggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  4045625 ggttagaattcacctttttcaagatgaataagtggggtgtc 4045665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 28951971 - 28951931
Alignment:
Q  304 tggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  28951971 tggttagaattcacatttttcaaggtgaataagtggggtgt 28951931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 32080156 - 32080120
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||||||||||||||| ||||||||||    
T  32080156 tagaattcacctttttcaaggtgaataagtggggtgt 32080120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 33533319 - 33533267
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||| |||||||||||| ||||| ||||||||| |||||| ||||    
T  33533319 aagtagtctagttgttagaattcactttttttaaggtgaataagtgggatgtc 33533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 38571401 - 38571441
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  38571401 aagtagtctagtggctagaattcaccattttcaaggtgaat 38571441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 49299219 - 49299271
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| ||||||||| |||| ||||||||||| ||||| |||||    
T  49299219 aagtagtctagtggctagaattcagctttctcaaggtgaataagtggagtgtc 49299271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 4009997 - 4010048
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||| ||||||||||||||||| | |||||||||||||| | ||||||||    
T  4009997 aagtagcctagtggttagaattcaacattttcaaggtgaataaatggggtgt 4010048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 2995710 - 2995672
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  2995710 gtagtctagtggctagaattaacctttttcaaggtgaat 2995672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 23026003 - 23025961
Alignment:
Q  303 gtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||| || |||||| |||||||||||    
T  23026003 gtggttagaattcaccttttttaaagtgaataagtggggtgtc 23025961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 2903824 - 2903775
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggt 342  Q
    |||||||||| ||| |||||| ||||||||||||||||||| ||| ||||    
T  2903824 aagtagtctaatggctagaatccacctttttcaaggtgaataagttgggt 2903775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 18399633 - 18399675
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagt 337  Q
    |||||||||||||| |||||||||||||||  |||||||||||||    
T  18399633 aagtagtctagtggctagaattcacctttt--aaggtgaatgagt 18399675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 31680844 - 31680796
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||| || ||||||||||||| ||||||||| |||||||||||    
T  31680844 tagtctagtggctaaaattcaccttttt-aaggtgaataagtggggtgtc 31680796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 36763548 - 36763495
Alignment:
Q  293 aagtagtctagtggttagaa-ttcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| ||||| ||||||||||| ||| ||||| |||||||||||    
T  36763548 aagtagtctagtggctagaaattcacctttttaaagatgaataagtggggtgtc 36763495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 3993686 - 3993738
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||||||||||||||| ||||||| ||| || | |||||||||    
T  3993686 aagtagcctagtggttagaattcaccattttcaaagtgcataaatggggtgtc 3993738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 40956666 - 40956706
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    ||||||| ||||||||||||||||||||||| ||| |||||    
T  40956666 aagtagtttagtggttagaattcaccttttttaagctgaat 40956706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 341
Target Start/End: Complemental strand, 51493714 - 51493666
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtgggg 341  Q
    ||||||| ||||||||||||||||| |||||| |||||| | |||||||    
T  51493714 aagtagtatagtggttagaattcacttttttcgaggtgattaagtgggg 51493666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 1155 - 1103
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  1155 aagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtc 1103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 2567813 - 2567861
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtg 343  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  2567813 gtagtctagtggttagaattcacctttttcaaggttaataagtggggtg 2567861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 24579265 - 24579317
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  24579265 aagtagtttagtggatagaattcacctttttcaaggtgaataagtggggtgtc 24579317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 44409309 - 44409265
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  44409309 ctagtggttagaattcacctttttcaaggtgaataagtggggtgt 44409265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 26734257 - 26734302
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  26734257 ctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 26734302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 38328547 - 38328597
Alignment:
Q  294 agtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||| |||||||||||||| |||||||||||||||||| | ||||||||    
T  38328547 agtagtttagtggttagaattaacctttttcaaggtgaataaatggggtgt 38328597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 1649261 - 1649216
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||    
T  1649261 ctagtggctagaattcaccattttcaaggtgaataagtggggtgtc 1649216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 11808155 - 11808102
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttc-aaggtgaatgagtggggtgtc 345  Q
    |||||||||||| |||||||||||| |||||| ||||||||| |||||||||||    
T  11808155 aagtagtctagttgttagaattcacgtttttctaaggtgaataagtggggtgtc 11808102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 32309127 - 32309179
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| |||||||||| ||||| ||||||||| | |||||||||    
T  32309127 aagtagtctagtggctagaattcacattttttaaggtgaataactggggtgtc 32309179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 35498505 - 35498461
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||    
T  35498505 tagtggctagaattcacctttttcaaagtgaataagtggggtgtc 35498461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 3246468 - 3246519
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||| |||||||||||||||||||||||||||| || ||| ||| ||||||    
T  3246468 aagtaatctagtggttagaattcacctttttcaaagtaaataagtagggtgt 3246519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 8214222 - 8214174
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  8214222 gtagtctagtggttagaattcaccttat--aaggtgaataagtggggtgtc 8214174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 10020448 - 10020495
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggg 340  Q
    |||||| ||||||| |||||||||||||||||||| ||||| ||||||    
T  10020448 aagtaggctagtgggtagaattcacctttttcaagatgaataagtggg 10020495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 10958148 - 10958097
Alignment:
Q  294 agtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||| ||||||| ||||||||||||||||  |||||||| |||||||||||    
T  10958148 agtagcctagtggctagaattcaccttttttgaggtgaataagtggggtgtc 10958097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 22965941 - 22965989
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  22965941 gtagtctagtggttagaattcaccttat--aaggtgaataagtggggtgtc 22965989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 41000876 - 41000829
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggg 340  Q
    ||||||||| ||||||||||||||| ||||| ||||||||| ||||||    
T  41000876 aagtagtctggtggttagaattcacattttttaaggtgaataagtggg 41000829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 23470482 - 23470520
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  23470482 gtagtctagtggttagaactcacctttttcaagatgaat 23470520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 3481148 - 3481193
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtg 338  Q
    ||||||| |||||||||||||||||| |||| ||||||||| ||||    
T  3481148 aagtagtttagtggttagaattcaccatttttaaggtgaataagtg 3481193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 17997719 - 17997769
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| |||||||||||||||  ||||||||| | |||||||||    
T  17997719 aagtagtctagtggctagaattcacctttt--aaggtgaataaatggggtgtc 17997769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Original strand, 27726348 - 27726377
Alignment:
Q  293 aagtagtctagtggttagaattcacctttt 322  Q
    ||||||||||||||||||||||||||||||    
T  27726348 aagtagtctagtggttagaattcacctttt 27726377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Complemental strand, 38363272 - 38363235
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaat 333  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  38363272 tagtctagtggttagaattcaccttttttaagatgaat 38363235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Complemental strand, 5773240 - 5773200
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggg 340  Q
    ||||||| |||||| ||||||||||||||||||| ||||||    
T  5773240 ctagtgggtagaatccacctttttcaaggtgaataagtggg 5773200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 32534575 - 32534623
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||| |||||||||||||||| |||||| ||||| ||| ||||||||||    
T  32534575 tagtttagtggttagaattcatcttttttaaggttaataagtggggtgt 32534623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 36343359 - 36343411
Alignment:
Q  294 agtagtctagtggttagaattcacc-tttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| |||||||||||||||||| ||||| || |||||| |||||||||||    
T  36343359 agtagtatagtggttagaattcaccattttttaaagtgaataagtggggtgtc 36343411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 42976579 - 42976631
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||| | |||||||||||||||| || |||||| ||||| |||||    
T  42976579 aagtagtctagtaggtagaattcaccttttttaaagtgaataagtggagtgtc 42976631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 43635704 - 43635652
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||| ||||||||||| |||  ||||||||| |||||||||||    
T  43635704 aagtagtttagtggctagaattcaccctttgtaaggtgaataagtggggtgtc 43635652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 4844259 - 4844207
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  4844259 aagtagtctagtggttagaattcacttttttcaaggtgaataagtgaggtgtc 4844207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 26669638 - 26669690
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  26669638 aagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtc 26669690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 20149958 - 20150010
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||| | |||||||||||||||||||||||||| |||||||||||    
T  20149958 aagtaggctagtagatagaattcacctttttcaaggtgaataagtggggtgtc 20150010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 22182874 - 22182822
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||| | |||||||||||||||||||||||||| |||||||||||    
T  22182874 aagtaggctagtagatagaattcacctttttcaaggtgaataagtggggtgtc 22182822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 17347368 - 17347318
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||| ||||||||||| |||||||| ||||||||| |||||||||||    
T  17347368 gtagtctaatggttagaatttaccttttttaaggtgaataagtggggtgtc 17347318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 7234066 - 7234029
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||| |||||||||||    
T  7234066 tagaattcacctttttcaaggtgaataagtggggtgtc 7234029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 9438416 - 9438366
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||||||||||||||||| |  |||||||||||||||||||||    
T  9438416 aagtagcctagtggttagaattcaccttat--aaggtgaatgagtggggtgtc 9438366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 3243930 - 3243887
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtg 338  Q
    ||||| ||||||||||||||||||||||| ||||||||| ||||    
T  3243930 gtagtttagtggttagaattcaccttttttaaggtgaataagtg 3243887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Complemental strand, 32372552 - 32372513
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggg 340  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  32372552 tagtggttaaaattcacctttttcaaggtgaataagtggg 32372513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 323
Target Start/End: Complemental strand, 9031883 - 9031853
Alignment:
Q  293 aagtagtctagtggttagaattcaccttttt 323  Q
    |||||||||||||||||||||||||||||||    
T  9031883 aagtagtctagtggttagaattcaccttttt 9031853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 10455857 - 10455811
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtgggg 341  Q
    ||||||||||||||||||||| | |||||||||| |||| |||||||    
T  10455857 gtagtctagtggttagaattctcttttttcaaggagaataagtgggg 10455811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 344
Target Start/End: Original strand, 29204853 - 29204899
Alignment:
Q  298 gtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||| ||||||||||||||| ||||| ||||||||| ||||||||||    
T  29204853 gtctggtggttagaattcactttttttaaggtgaataagtggggtgt 29204899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 34524982 - 34524940
Alignment:
Q  302 agtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||    
T  34524982 agtggctagaattcacctttttccaggtgaataagtggggtgt 34524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 6530185 - 6530235
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| ||||||||||||| |  ||||||||| |||||||||||    
T  6530185 aagtagtctagtggctagaattcaccttat--aaggtgaataagtggggtgtc 6530235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 9422942 - 9422897
Alignment:
Q  301 tagtggttagaattcacctttt-tcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||||    
T  9422942 tagtggctagaattcaccttttatcaaggtgaataagtggggtgtc 9422897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 19680242 - 19680279
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  19680242 tagaattcacctttttcaaggagaataagtggggtgtc 19680279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 1395578 - 1395614
Alignment:
Q  302 agtggttagaattcacctttttcaaggtgaatgagtg 338  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  1395578 agtggctagaattcacctttttcaaggtgaataagtg 1395614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 3037576 - 3037620
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||| ||| ||||| |||||| ||||    
T  3037576 tagtggttagaattcaccttttttaagatgaataagtgggttgtc 3037620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 6455569 - 6455517
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||||  ||||||||| |||||||||||||||| ||| |||||||    
T  6455569 aagtagcctagtgtctagaattcatctttttcaaggtgaataagtagggtgtc 6455517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 8176113 - 8176061
Alignment:
Q  293 aagtagtctagtggttagaattcacct-ttttcaaggtgaatgagtggggtgt 344  Q
    ||||||| |||| |||||||||||||| |||| ||||||||| ||||||||||    
T  8176113 aagtagtttagtagttagaattcacctttttttaaggtgaataagtggggtgt 8176061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 12291286 - 12291234
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| |||||||||||||| || |||||||||| ||||| | |||||||||    
T  12291286 aagtagcctagtggttagaatacatctttttcaagctgaataaatggggtgtc 12291234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 17305624 - 17305581
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  17305624 tagtgattagaattcac-tttttcaaggtgaataagtggggtgtc 17305581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 195152 - 195108
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  195152 tagtggttagaattcacctttttcaaggtgaataagtggggtgtc 195108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 9769567 - 9769611
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  9769567 tagtggttagaattcacctttttcaaggtgaataagtggggtgtc 9769611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 41677174 - 41677124
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||||| |||||||||||||||||||||||||| |||||||||||    
T  41677174 gtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 41677124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 3341722 - 3341767
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||    
T  3341722 ctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 3341767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 23750264 - 23750215
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  23750264 gtagcctagtggttagaattcacctttttcaagatgaataagtggggtgt 23750215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 13941435 - 13941383
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||    
T  13941435 aagtagtttagtggttagaattcacttttttcaagatgaataagtggggtgtc 13941383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 19866591 - 19866539
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||||| |||||||||||||||| ||||||||| |||||||||||    
T  19866591 aagtagtttagtggctagaattcaccttttttaaggtgaataagtggggtgtc 19866539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 33844733 - 33844681
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| || |||||||||||||||| |||||| |||||||||||    
T  33844733 aagtagtctagtggctataattcacctttttcaaagtgaataagtggggtgtc 33844681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 33949245 - 33949297
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||| || |||||||||||||||| |||||| |||||||||||    
T  33949245 aagtagtctagtggctataattcacctttttcaaagtgaataagtggggtgtc 33949297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 38028653 - 38028601
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| ||||| |||||||||||| ||||||||||||||| |||||||||||    
T  38028653 aagtagcctagtagttagaattcacatttttcaaggtgaataagtggggtgtc 38028601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 43020719 - 43020675
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| |||||||||| |||||||||||||||||||||||||||    
T  43020719 tagtggctagaattcacatttttcaaggtgaatgagtggggtgtc 43020675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 9931203 - 9931152
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||| ||||||||||||||| || ||||||||| ||||||||||    
T  9931203 aagtagtctagtagttagaattcaccttctttaaggtgaataagtggggtgt 9931152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 23973461 - 23973512
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||| |||||||||| |||||||| |||||| ||||||||||    
T  23973461 aagtagtctagtggctagaattcacatttttcaacgtgaataagtggggtgt 23973512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 2643796 - 2643846
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||| ||||| ||||| ||||||||| |||||||||||    
T  2643796 gtagtctagtggttagagttcacattttttaaggtgaataagtggggtgtc 2643846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 9768790 - 9768840
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||| | |||||||||||||||||||||||||| |||||||||||    
T  9768790 gtagcctagtagctagaattcacctttttcaaggtgaataagtggggtgtc 9768840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 12553308 - 12553258
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||||| ||||||||||||||||||| |||||| |||||||||||    
T  12553308 gtagcctagtggctagaattcacctttttcaaagtgaataagtggggtgtc 12553258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 50199457 - 50199507
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||| ||||||| ||||||| |||||||||||||||||| |||||||||||    
T  50199457 gtagcctagtggctagaattgacctttttcaaggtgaataagtggggtgtc 50199507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 27654999 - 27655036
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||| |||||||||||    
T  27654999 tagaattcacctttttcaaggtgaataagtggggtgtc 27655036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 32609233 - 32609282
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||||||||||| ||||||||||| |||| | ||||||||    
T  32609233 gtagtctagtggttagaattcatctttttcaaggcgaataaatggggtgt 32609282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 35424256 - 35424207
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggt 342  Q
    |||||||||||||| ||||||||| |||||||||||||||| | ||||||    
T  35424256 aagtagtctagtggctagaattcatctttttcaaggtgaataaatggggt 35424207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 1576100 - 1576152
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||||    
T  1576100 aagtagtttagtgattagaattcacttttttcaaggtaaataagtggggtgtc 1576152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 2903013 - 2903057
Alignment:
Q  300 ctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||    
T  2903013 ctagtggctagaattctcctttttcaaggtgaataagtggggtgt 2903057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 4511507 - 4511551
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaaggtgaatgagtggg 340  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||    
T  4511507 tagtatagtggttagaattcaccttttttaaggtgaataagtggg 4511551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Original strand, 9410307 - 9410359
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| |||| |||| ||||||||||||||||| ||||| |||||||||||    
T  9410307 aagtagtttagtagttaaaattcacctttttcaagatgaataagtggggtgtc 9410359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 9976371 - 9976415
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| |||||||||| ||||||||||||||| |||||||||||    
T  9976371 tagtggctagaattcacttttttcaaggtgaataagtggggtgtc 9976415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 50147640 - 50147588
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||| ||||||||||||||||| ||||| ||||||||| | |||||||||    
T  50147640 aagtagtttagtggttagaattcactttttttaaggtgaataaatggggtgtc 50147588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 8904370 - 8904319
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||| |||||| |||||||||||||||||||||  ||||| ||||||||||    
T  8904370 aagtaatctagttgttagaattcacctttttcaaaatgaataagtggggtgt 8904319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 21884687 - 21884639
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  21884687 gtagtctagtggttagaattcaccttat--aaggtgaataagtggggtgtc 21884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 18003923 - 18003881
Alignment:
Q  302 agtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||    
T  18003923 agtggctagaattcacctttttccaggtgaataagtggggtgt 18003881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 326
Target Start/End: Complemental strand, 18646799 - 18646769
Alignment:
Q  296 tagtctagtggttagaattcacctttttcaa 326  Q
    |||||||||||||||||||||||||||||||    
T  18646799 tagtctagtggttagaattcacctttttcaa 18646769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 11238022 - 11238059
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  11238022 tagaattcacctttttcaagatgaataagtggggtgtc 11238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 48260183 - 48260220
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  48260183 tagaattcacatttttcaaggtgaataagtggggtgtc 48260220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 3261968 - 3261928
Alignment:
Q  299 tctagtggttagaattcacctttttcaaggtgaatgagtgg 339  Q
    |||| |||||||||||||| ||||||||||||||| |||||    
T  3261968 tctactggttagaattcacatttttcaaggtgaataagtgg 3261928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 16182917 - 16182873
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    ||||||||||||||||  ||||||||| ||||| |||||||||||    
T  16182917 tagtggttagaattcatatttttcaagatgaataagtggggtgtc 16182873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 41998205 - 41998161
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| |||||||| |||||||||| |||||| |||||||||||    
T  41998205 tagtggctagaattcgcctttttcaatgtgaataagtggggtgtc 41998161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 49632388 - 49632352
Alignment:
Q  308 tagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  49632388 tagaattcacctttttaaaggtgaataagtggggtgt 49632352  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 440513 - 440464
Alignment:
Q  295 gtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  440513 gtagcctagtggttagaattcaccttttttaaggtgaataagtggggtgt 440464  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 344
Target Start/End: Complemental strand, 7172 - 7121
Alignment:
Q  293 aagtagtctagtggttagaattcacctttttcaaggtgaatgagtggggtgt 344  Q
    |||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||    
T  7172 aagtagtcaagtggctagaattcacctttttcaagatgaataagtggagtgt 7121  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 25499 - 25457
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtg 343  Q
    |||||||||||||||||||||||||| |||||| |||| ||||    
T  25499 tagtggttagaattcacctttttcaaagtgaataagtgaggtg 25457  T

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Target: scaffold0172 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 33448 - 33500
Alignment:
Q  293 aagtagtctagtggttagaattcacc-tttttcaaggtgaatgagtggggtgt 344  Q
    ||||||||||||||||||||| |||| ||||| ||||||||| | ||||||||    
T  33448 aagtagtctagtggttagaatccacctttttttaaggtgaataaatggggtgt 33500  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 67269 - 67225
Alignment:
Q  301 tagtggttagaattcacctttttcaaggtgaatgagtggggtgtc 345  Q
    |||||| |||||||||| ||||||||||||| | |||||||||||    
T  67269 tagtggctagaattcacttttttcaaggtgattaagtggggtgtc 67225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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