View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_129 (Length: 344)
Name: NF1498_high_129
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_129 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 29468208 - 29467880
Alignment:
| Q |
1 |
tgtgtagtcgctctgtagtataatatgctaatgaaattagtaagtagctaaataacacttgctaaacaaaatcaaaacttttatagataagataagacaa |
100 |
Q |
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| T |
29468208 |
tgtgtagtcgctctgtagtataatatgctaatgaaattagtaagtagctaaataacacttgctaaacaaaatcaaaacttttatagataagataagacaa |
29468109 |
T |
|
| Q |
101 |
acaaaattagaaaatgaatgaaagcaaataacatcagtaattcagtatcaatagataatatgacaaacctgagaatcaagatcaagggtcaccatatcaa |
200 |
Q |
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| T |
29468108 |
acaaaattaaaaaattaatgaaagcaaacaacatcagtaattcagtatcaatatataatatgacaaacctgagaatcaaggtcaagggtcaccatatcaa |
29468009 |
T |
|
| Q |
201 |
tacgatctttgaaattcggattgctctctttaaccatctccaatgccttgacgatgttatcaggagacaatttggtgaaggcattcgcaagtattaattt |
300 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29468008 |
tacgatctttgaaatttggattgctctctttaactatctccaatgccttgacgatgttatcaggagacaatttggtgaaggcattcgcaagtattaattt |
29467909 |
T |
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| Q |
301 |
ctccggatgtgacagtttcctgaagtatt |
329 |
Q |
| |
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| T |
29467908 |
ctccggatgtgacagtttcctgaagtatt |
29467880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 14999349 - 14999034
Alignment:
| Q |
1 |
tgtgtagtcgctctgtag-tataatatgctaatgaaattagtaagtagctaaataacacttgctaaacaaaatcaaaacttttatagataagataagaca |
99 |
Q |
| |
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||||||||||||||||| |||| ||||||||| |||||||| || || |||||||||||||||||||||| |||||||||| |||||| |||||||||| |
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| T |
14999349 |
tgtgtagtcgctctgtatatatattatgctaattaaattagtgaggagataaataacacttgctaaacaaagtcaaaacttt-atagatcagataagaca |
14999251 |
T |
|
| Q |
100 |
aacaaaattagaaaatgaatgaaagcaaataacatcagtaattcagtatcaatagataatatgacaaacctgagaatcaagatcaagggtcaccatatca |
199 |
Q |
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|| |||||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||||||| | ||| ||||| ||||| |
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| T |
14999250 |
aagaaaattagaaaatgcatgaaagaaaataacattagt-------------tagataatatgacaaacctgagaatcaaagttaagcatcaccgtatca |
14999164 |
T |
|
| Q |
200 |
atacgatctttgaaattcggattgctctctttaaccatctccaatgccttgacgatgttatcaggagacaatttggtgaaggcattcgcaagtattaatt |
299 |
Q |
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| || ||| | |||| |||||| ||||| |||| | | | |||||||||||| || || ||||||| ||| |||||||||| ||||| ||| ||| |
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| T |
14999163 |
acactatcatcaaaatctggattggtctctctaactaccgctaatgccttgacgcgattctctagagacaaattgttgaaggcatttgcaagcattgatt |
14999064 |
T |
|
| Q |
300 |
tctccggatgtgacagtttcctgaagtatt |
329 |
Q |
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|||||||| ||| ||||||||||||||||| |
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| T |
14999063 |
tctccggaagtgtcagtttcctgaagtatt |
14999034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 14741475 - 14741618
Alignment:
| Q |
149 |
caatagataatatgacaaacctgagaatcaagatcaagggtcaccatatcaatacgatctttgaaattcggattgctctctttaaccatctccaatgcct |
248 |
Q |
| |
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|||||| ||| ||||||||||| || ||||| | |||||||||||||||||||| || || |||||| ||||| |||||||||| ||||| ||||||| |
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| T |
14741475 |
caataggtaacatgacaaacctcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttggattattctctttaacaatctctaatgcct |
14741574 |
T |
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| Q |
249 |
tgacgatgttatcaggagacaatttggtgaaggcattcgcaagt |
292 |
Q |
| |
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| | || ||||||||||||||| |||| || ||||||||||||| |
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| T |
14741575 |
taaggaggttatcaggagacaacttggggatggcattcgcaagt |
14741618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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