View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_139 (Length: 329)
Name: NF1498_high_139
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_139 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 33700890 - 33701207
Alignment:
| Q |
1 |
tctcaagcaaaagacaacaagagcgtggcttaaacacgacaccgacacatgtatttacattcatgtttgtgtgtctaatgtctatgttcgtatctcatag |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | || ||||||||||||||||| |
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| T |
33700890 |
tctcaagcaaaagacaacaagaacgtggcttaaacacgacactgacacatgtgtttacattcatgtttgtgtgtgtc---tccatgttcgtatctcatag |
33700986 |
T |
|
| Q |
101 |
acaatatctccttagaaggaatgagaccttgttaaatttatttttcaacccnnnnnnnnnnnnnng---------ttttgcttaaatagtcatgcatgac |
191 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
33700987 |
acaatatctccttagaaggaatgagaccttgttaaatttatttttcaacccaaaaaaaaaaaacagaaaaaatagttttgcttaaatagtcatgcatgac |
33701086 |
T |
|
| Q |
192 |
tatataagcaacttattaaacattcaacgtttcattttctctatatttcttccttcatgtcacattataccaacctattatatctacctcgtcaca--gt |
289 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33701087 |
tatataagcaacctattaaacattcaacgtttcattttatctatatttcttccttcatgtcacattataccaacctattatatctacctcgtcacactgt |
33701186 |
T |
|
| Q |
290 |
tttttctctttataccaagat |
310 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
33701187 |
tttttctctttataccaagat |
33701207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 23851529 - 23851496
Alignment:
| Q |
30 |
ttaaacacgacaccgacacatgtatttacattca |
63 |
Q |
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||||||||||||||||||||||| |||||||||| |
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|
| T |
23851529 |
ttaaacacgacaccgacacatgtgtttacattca |
23851496 |
T |
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