View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_14 (Length: 608)
Name: NF1498_high_14
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_14 |
 | |
|
| [»] scaffold0989 (2 HSPs) |
| | |
|
| [»] scaffold0466 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Complemental strand, 12765998 - 12765406
Alignment:
| Q |
1 |
aatatgctcgaatttgagatctaattagtagagtatcttctccataattcttacatcttctagcttctcaaaatatattttaattaatttgaaatagcga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12765998 |
aatatgctcgaatttgagatctaattagtagagtatcttctccataattcttacatcttctagcttctcaaaatatattttaattaatttgaaatagcga |
12765899 |
T |
|
| Q |
101 |
taactctagataaatgttcagaaatcatttatgactctttcatatgcaaagatttgaactcaccttagagtttcgaaaaacaacttctttactttgccct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12765898 |
taactctagataaatgttcagaaatcatttatgactctttcatatgcaatgatttgaactcaccttagagtttcgaaaaacaacttctttactttgccct |
12765799 |
T |
|
| Q |
201 |
ctcctttacaagagttttgaaacctctcctataccttcttaatgcatattgaatttgaaattttcttgaactcatctttatccaatgcttgatagacgag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12765798 |
ctcctttacaagagttttgaaacctctcctataccttcttaatgcattttgaatttgaaattttcttgaactcatctttatccaatgcttgatagatgag |
12765699 |
T |
|
| Q |
301 |
gaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtcttgtgattccttacaacctttctta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
12765698 |
gaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatcattgtcttgtgattccttacaacctttttta |
12765599 |
T |
|
| Q |
401 |
acaacctcccaagttcaccaataagagcctttgttttcatacaataattatcataggtatttcctattacaagtggaacttggaaggctgtcgctccatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12765598 |
acaacctcccaagttcaccaataagagcctttgttttcatacaataattatcataggtatttcctattacaagtggaacttggaaggatgtcgctccatt |
12765499 |
T |
|
| Q |
501 |
gttcgccgtgactataaaatgattcttttctcaacctaaagtcatatgccacttctttagaaaatgataaggttatagaatcttttgggatat |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12765498 |
gttcgccgtgactataaaatgattcttttctgaacctaaagtcatatgccacttctttagaaaatgataaggttatagaatcttttgggatat |
12765406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 184 - 412
Target Start/End: Original strand, 709 - 937
Alignment:
| Q |
184 |
cttctttactttgccctctcctttacaagagttttgaaacctctcctataccttcttaatgcatattgaatttgaaattttcttgaactcatctttatcc |
283 |
Q |
| |
|
||||||||| ||| | ||||||| |||||| ||| || | ||||| || ||| |||| | || ||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
709 |
cttctttaccttgtcttctccttggcaagaggttttaagcttctcccatgcctccttagcggatgttgcatttgaaattttctcgaactcatcttcatcc |
808 |
T |
|
| Q |
284 |
aatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtcttgtgatt |
383 |
Q |
| |
|
|||||||| |||| |||||| ||| || ||||||||||||||||||| |||||| | ||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
809 |
aatgcttggtagatgaggaagagagcctttttgtctctctttcttgaatccttcaaagtgtctctttgtgctttagttaaggaatcctcatcttgtgatt |
908 |
T |
|
| Q |
384 |
ccttacaacctttcttaacaacctcccaa |
412 |
Q |
| |
|
||||| | ||||| | ||||||||||||| |
|
|
| T |
909 |
ccttatagcctttttcaacaacctcccaa |
937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 534 - 649
Alignment:
| Q |
1 |
aatatgctcgaatttgagatctaattagtagagtatcttctccataattcttacatcttctagcttctcaaaatat-attttaattaatttgaaatagcg |
99 |
Q |
| |
|
|||||||||||||||| | |||||| | ||||||||||||||||||||| |||||||||| ||| ||| | | |||||||| |||||| |||| | |
|
|
| T |
534 |
aatatgctcgaatttggggtctaatgatcggagtatcttctccataattctcacatcttctaacttttcactgtttctttttaattgatttgagatagag |
633 |
T |
|
| Q |
100 |
ataactctagataaat |
115 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
634 |
ataactctagaaaaat |
649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 25622997 - 25623116
Alignment:
| Q |
269 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
368 |
Q |
| |
|
||||||| |||||| | ||||||||||| |||||| || ||||||||||||| |||||| ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
25622997 |
aactcatatttatctagtgcttgatagatgaggaagagatatttcttgtctctatttcttaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25623096 |
T |
|
| Q |
369 |
ccttgtcttgtgattcctta |
388 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
25623097 |
cttcatcttgtgattcctta |
25623116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 388
Target Start/End: Complemental strand, 7029953 - 7029836
Alignment:
| Q |
269 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
368 |
Q |
| |
|
|||||||||| || ||||||||| |||| |||||| ||| ||||||| ||||||||||||||| |||||| |||| |||||| ||||||| | ||| |
|
|
| T |
7029953 |
aactcatcttcatacaatgcttggtagaagaggaagggagctttcttgcctctctttcttgaatccttcaaa--atatttttgtgtttgagttggtgaat |
7029856 |
T |
|
| Q |
369 |
ccttgtcttgtgattcctta |
388 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
7029855 |
cttcatcttgtgattcctta |
7029836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 388
Target Start/End: Original strand, 25656499 - 25656610
Alignment:
| Q |
277 |
tttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatccttgtct |
376 |
Q |
| |
|
|||||| | |||||| |||| |||||| || ||||||||||||| |||||| ||| ||||||| ||||| |||| ||||| |||| |||| | ||| |
|
|
| T |
25656499 |
tttatctagtgcttggtagatgaggaagagatatttcttgtctctatttcttaaatccttcaaaatatatcattgtacttgatttaacgaatcttcatct |
25656598 |
T |
|
| Q |
377 |
tgtgattcctta |
388 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25656599 |
tgtgattcctta |
25656610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 25805369 - 25805488
Alignment:
| Q |
269 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
368 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||| ||||||||| ||| || ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
25805369 |
aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25805468 |
T |
|
| Q |
369 |
ccttgtcttgtgattcctta |
388 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
25805469 |
cttcatcttgtgattcctta |
25805488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 25810399 - 25810518
Alignment:
| Q |
269 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
368 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||| ||||||||| ||| || ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
25810399 |
aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25810498 |
T |
|
| Q |
369 |
ccttgtcttgtgattcctta |
388 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
25810499 |
cttcatcttgtgattcctta |
25810518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 388
Target Start/End: Original strand, 25823093 - 25823212
Alignment:
| Q |
269 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
368 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||| ||||||||| ||| || ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
25823093 |
aactcatatttatctagtgcttggtagatgaggaagagatattgcttgtctctatttattaaatccttcaaaatatatcattgtgcttgatttaacgaat |
25823192 |
T |
|
| Q |
369 |
ccttgtcttgtgattcctta |
388 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
25823193 |
cttcatcttgtgattcctta |
25823212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 388
Target Start/End: Complemental strand, 3471 - 3352
Alignment:
| Q |
269 |
aactcatctttatccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaat |
368 |
Q |
| |
|
||||||| |||||| | |||||| |||| |||||| || ||||||| ||||| |||||| ||| ||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
3471 |
aactcatatttatctagtgcttggtagatgaggaagagatatttcttatctctatttcttaaatccttcaaaatatatcattgtgcttgatttaacgaat |
3372 |
T |
|
| Q |
369 |
ccttgtcttgtgattcctta |
388 |
Q |
| |
|
| | ||||||||||||||| |
|
|
| T |
3371 |
cttcatcttgtgattcctta |
3352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 11577278 - 11577217
Alignment:
| Q |
310 |
tttcttgtctctctttcttgaatatttcaaaacatatctttgtgcttgagttaataaatcct |
371 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
11577278 |
tttcttgtctctctttcttgaatccttcaaaatttctctttgtgcttgagttagaaaatcct |
11577217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 18008572 - 18008640
Alignment:
| Q |
282 |
ccaatgcttgatagacgaggaatcgagatttcttgtctctctttcttgaatatttcaaaacatatcttt |
350 |
Q |
| |
|
|||||||||| |||| || |||| ||| ||| |||||||||||||||||||| || |||| || ||||| |
|
|
| T |
18008572 |
ccaatgcttggtagatgatgaatagagcttttttgtctctctttcttgaatagtttaaaatatctcttt |
18008640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University