View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_146 (Length: 323)
Name: NF1498_high_146
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_146 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39454624 - 39454932
Alignment:
| Q |
1 |
aatgactaaattacaagaatcatttaaccaattagtgactaactaactgaaagtgaaacacacaataataagataatttatgaacataaactaaattttt |
100 |
Q |
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| T |
39454624 |
aatgactaaattacaagaatcatttaaccaattagtgactaactaactgaaagtgaaatacacaataataagataatttatgaacataaactaaattttt |
39454723 |
T |
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| Q |
101 |
atatgcaaatttggcaaatttactccaaagaataagaaactgaagagacattacatgattcttacacatcaagtacttttataacacattcaccggttgg |
200 |
Q |
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| T |
39454724 |
atatgcaaatttcgcaaatttactccaaagaataagaaactgaagagacattacatgattcttacacatcaagtacttttataacacattcaccggttgg |
39454823 |
T |
|
| Q |
201 |
taagatattgcaggcactaaagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtactctgaagtgtttgcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39454824 |
taagatattgcaggcactaaagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtactctgaagtgtttgcag |
39454923 |
T |
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| Q |
301 |
ttcattgtg |
309 |
Q |
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||||||||| |
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| T |
39454924 |
ttcattgtg |
39454932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 47365893 - 47365983
Alignment:
| Q |
220 |
aagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtactctgaagtgtttgcagttcattgtga |
310 |
Q |
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| T |
47365893 |
aagggaatagtgaagcttcaagctatcattcgtggcagagctgtaagacggcaagctatgagtactcttaagtgtttgcagtccattgtga |
47365983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 15693 - 15774
Alignment:
| Q |
220 |
aagggaatagtgaagcttcaagttatcattcgtggtagaactgtaagtcggcaagctatgagtactctgaagtgtttgcagt |
301 |
Q |
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|||||||||||||| ||||||| |||||||||||| ||| | || || || |||||||||| ||| |||||| | ||||||| |
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| T |
15693 |
aagggaatagtgaaacttcaagctatcattcgtggaagagcagtgagacgccaagctatgaatacactgaagagcttgcagt |
15774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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