View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_148 (Length: 316)
Name: NF1498_high_148
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_148 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 42262169 - 42261873
Alignment:
| Q |
1 |
gattagaattggttgtcttgctatttgatttactttgttaaaaaacaatgcattgggggaagggattatattccttagaggctatgattcaggagaaata |
100 |
Q |
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| T |
42262169 |
gattagaattagttgtcttgctatttgatttactttgttaaaaaacaatgcattgggg-aagggattatattccttagaggctatgattcaggagaaata |
42262071 |
T |
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| Q |
101 |
cggctctagctatttcttatacaagttttgggtttcacaattctggcactttaaagatgtttgcctttatcaactttctttcaaaatagttactaaatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42262070 |
cggctctagctatttcttatacaagttttgggtttcacaattctggctctttaaagatgtttgcctttatcaactttctttcaaaatagttactagatgt |
42261971 |
T |
|
| Q |
201 |
tgtgagattatggccaatatgtatatttttactcataagtctaatgactcaaaccctcggtgtgctttaatggagtgtttaggaagggagggaaggac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||| |
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| T |
42261970 |
tgtgagattatggccaatatgtatatttttactcataagtctaatgactcaaaccttaggtgtgctttgatggagtgtttaggatgggagggaaggac |
42261873 |
T |
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