View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_150 (Length: 312)
Name: NF1498_high_150
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_150 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 7646344 - 7646166
Alignment:
| Q |
1 |
gctatcatgatttacaacatgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatccaaggagccaatttagat |
100 |
Q |
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| T |
7646344 |
gctatcatgatttacaacatgcactaactatttgtgctaggcatcaacgataaataaattaattgatgtgttatttttaatcgaaggagccaatttagat |
7646245 |
T |
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| Q |
101 |
tcatatgatca-nnnnnnnncattactaagacaaataaattaacaatgaaaacttagaggac-aaacaaaattaaatat |
177 |
Q |
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| T |
7646244 |
tcatatgttcatttttttttcattactaagacaaataaattaacaatgaaaacttagaggacaaaaaaaaattaaatat |
7646166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 7646081 - 7646038
Alignment:
| Q |
265 |
tatgtgttctgagatggattaatattgtgaagggagatgatgtc |
308 |
Q |
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| T |
7646081 |
tatgtgttctgagatggattaatattgtgaagggatgtgatgtc |
7646038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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