View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_154 (Length: 311)

Name: NF1498_high_154
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_154
NF1498_high_154
[»] chr3 (1 HSPs)
chr3 (14-305)||(53693521-53693812)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 53693812 - 53693521
Alignment:
Q  14 gagttggtttgagcttcatcatcttgtttgctcaaagaatcatcagtatcataatacagttttggttcctgaccaacctatatattttgtcattgttatc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53693812 gagttggtttgagcttcatcatcttgtttgctcaaagaatcatcagtatcataatacagttttggttcctgaccaacctatatattttgtcattgttatc 53693713  T
Q  114 atggttttccatgttttgaaatttctaatctgtatgggttattccttcacaggtcagaggagactcgaaacagaaatgcagtagcatcaactgcaataag 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53693712 atggttttccatgttttgaaatttctaatctgtatggattattccttcacaggtcagaggagactcgaaacagaaatgcagtagcatcaactgcaataag 53693613  T
Q  214 tattcaataccatacctagacatatgagttataatcagtggtgtaaggtttaactcaaaacaaacggaagatcattatcactataactatgt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53693612 tattcaataccatacctagacatatgagttataatcagtggtgtaaggtttaactcaaaacaaacggaagatcattatcactataactatgt 53693521  T

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