View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_155 (Length: 309)

Name: NF1498_high_155
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_155
NF1498_high_155
[»] chr1 (1 HSPs)
chr1 (18-301)||(28675341-28675636)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 28675636 - 28675341
Alignment:
Q  18 tttggtgggtcccacatactctcttttgttgccattttgttaggaaggattcagtttgctgctttggatttcgaagaaaaggtaaagcttcaaaagtttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28675636 tttggtgggtcccacatactctcttttgttgccattttgttaggaaggattcagtttgctgctttggatttcgaagaaaaagtaaagcttcaaaagtttc 28675537  T
Q  118 agaagcttcaatgaaaaatggttcaaaagaatcacatatagaagaagaag------------aagaggaaaataacagagtatttaaagctaaagtttta 205  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||            |||| |||||||||||||||||||||||||||||||||    
T  28675536 agaagcttcaatgaaaaatggttcaaaagaatcatatatagaagaagaagaagaagaagaagaagaagaaaataacagagtatttaaagctaaagtttta 28675437  T
Q  206 gtttctgattctaatgattcttccactttttgttctactccaccaaaaaatgctttgttactaactagatgcaaatcagcaccatatagttcatct 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28675436 gtttctgattctaatgattcttccactttttgttctactccaccaaaaaatgctttgttactaactagatgcaaatcagcaccatatagttcatct 28675341  T

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