View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_16 (Length: 602)

Name: NF1498_high_16
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_16
NF1498_high_16
[»] chr4 (21 HSPs)
chr4 (19-320)||(922454-922758)
chr4 (26-145)||(11197269-11197388)
chr4 (519-580)||(922953-923014)
chr4 (407-455)||(922841-922889)
chr4 (41-138)||(10396189-10396286)
chr4 (41-101)||(10396474-10396534)
chr4 (42-145)||(11196995-11197098)
chr4 (83-146)||(34946393-34946456)
chr4 (50-102)||(50002493-50002545)
chr4 (50-102)||(50630792-50630844)
chr4 (50-101)||(22183302-22183353)
chr4 (50-101)||(54936263-54936314)
chr4 (53-102)||(25483406-25483455)
chr4 (50-102)||(18932786-18932838)
chr4 (50-102)||(22028406-22028458)
chr4 (53-101)||(36608699-36608747)
chr4 (50-102)||(36629304-36629356)
chr4 (74-102)||(43827530-43827558)
chr4 (50-102)||(45496872-45496924)
chr4 (50-102)||(49302973-49303025)
chr4 (50-102)||(55933161-55933213)
[»] chr7 (13 HSPs)
chr7 (41-140)||(21416142-21416241)
chr7 (44-136)||(23569007-23569099)
chr7 (41-146)||(21416426-21416531)
chr7 (23-90)||(27598025-27598092)
chr7 (50-102)||(11845258-11845310)
chr7 (52-100)||(14681579-14681627)
chr7 (54-101)||(34218074-34218121)
chr7 (53-102)||(9901713-9901762)
chr7 (50-102)||(23416-23468)
chr7 (50-102)||(1085655-1085707)
chr7 (50-102)||(29157632-29157684)
chr7 (50-102)||(30245144-30245196)
chr7 (50-102)||(40094813-40094865)
[»] chr5 (13 HSPs)
chr5 (23-106)||(13042579-13042662)
chr5 (23-106)||(13112577-13112660)
chr5 (31-145)||(13042302-13042416)
chr5 (31-145)||(13112296-13112410)
chr5 (23-145)||(13043036-13043158)
chr5 (23-145)||(13113032-13113154)
chr5 (62-145)||(36389277-36389359)
chr5 (50-102)||(6500889-6500941)
chr5 (50-101)||(26074679-26074730)
chr5 (48-101)||(35150071-35150124)
chr5 (44-137)||(36388980-36389073)
chr5 (50-102)||(9498693-9498745)
chr5 (50-102)||(40296354-40296406)
[»] chr6 (12 HSPs)
chr6 (20-133)||(11637729-11637842)
chr6 (59-138)||(11638016-11638095)
chr6 (53-102)||(3058296-3058345)
chr6 (51-99)||(1846816-1846864)
chr6 (50-102)||(2377821-2377873)
chr6 (50-102)||(3409326-3409378)
chr6 (50-102)||(3415525-3415577)
chr6 (54-102)||(16107749-16107797)
chr6 (50-102)||(16454642-16454694)
chr6 (50-102)||(29518570-29518622)
chr6 (50-102)||(29518987-29519039)
chr6 (50-102)||(32741246-32741298)
[»] chr8 (9 HSPs)
chr8 (41-145)||(18829838-18829942)
chr8 (26-139)||(3671143-3671256)
chr8 (50-99)||(9483229-9483278)
chr8 (26-140)||(3670800-3670914)
chr8 (52-102)||(30441154-30441204)
chr8 (50-103)||(30359338-30359391)
chr8 (50-102)||(5915934-5915986)
chr8 (50-102)||(6876901-6876953)
chr8 (50-102)||(20870612-20870664)
[»] chr3 (14 HSPs)
chr3 (26-137)||(48127819-48127930)
chr3 (76-138)||(48127605-48127667)
chr3 (47-133)||(53596539-53596625)
chr3 (50-102)||(12114601-12114653)
chr3 (50-102)||(22303994-22304046)
chr3 (41-123)||(53596018-53596100)
chr3 (41-123)||(53596333-53596415)
chr3 (50-99)||(39389137-39389186)
chr3 (50-102)||(29644941-29644993)
chr3 (51-102)||(29644620-29644671)
chr3 (50-102)||(15772921-15772973)
chr3 (50-102)||(22303698-22303750)
chr3 (50-102)||(22304636-22304688)
chr3 (53-101)||(45395693-45395741)
[»] chr2 (12 HSPs)
chr2 (26-101)||(28226380-28226455)
chr2 (41-140)||(28226713-28226811)
chr2 (50-102)||(15511534-15511586)
chr2 (44-140)||(22062795-22062891)
chr2 (41-97)||(30219925-30219981)
chr2 (50-102)||(36178644-36178696)
chr2 (50-102)||(962665-962717)
chr2 (50-102)||(14745333-14745385)
chr2 (50-102)||(14745706-14745758)
chr2 (50-102)||(15880330-15880382)
chr2 (26-145)||(35448613-35448730)
chr2 (50-102)||(36784299-36784351)
[»] scaffold0078 (2 HSPs)
scaffold0078 (50-102)||(5424-5476)
scaffold0078 (49-101)||(5048-5100)
[»] chr1 (7 HSPs)
chr1 (50-102)||(32594755-32594807)
chr1 (50-102)||(39066239-39066291)
chr1 (50-102)||(44043811-44043863)
chr1 (50-101)||(17294644-17294695)
chr1 (49-102)||(26661937-26661990)
chr1 (53-102)||(45494013-45494062)
chr1 (54-102)||(29798270-29798318)
[»] scaffold0702 (1 HSPs)
scaffold0702 (50-102)||(553-605)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 922454 - 922758
Alignment:
Q  19 atgaagcaaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagac 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  922454 atgaagcaaacgttagatatagaagagaggagacccataaacccattgtcttaggggtttggataagagtgtggtgtctctcttttagcggatcctagac 922553  T
Q  119 gtttaactcattgccgctccaaacgctttgtcagattttatgaagatctagttttgtgcttgaaaatagttatcacca---nnnnnnnnctttcaatttc 215  Q
    |||||| ||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||            ||||||||||    
T  922554 gtttaagtcattgccgctccaaacgcttcgttagattttataaagatctagttttgtgcttgaaaatagttatcaccatttttttttccttttcaatttc 922653  T
Q  216 atgtatgcgagttcgttgggttgtacctgtgtctggtgtttgtttattagggttgattacggttgtattatccattagaatgacctacacttttgactaa 315  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  922654 atgtatgcgagttcgttgggttgtacctgtgtctagtgtttgtttattagggttgattacagttgtattatccattagaatgacctacacttttgactaa 922753  T
Q  316 atcta 320  Q
    |||||    
T  922754 atcta 922758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 11197269 - 11197388
Alignment:
Q  26 aaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaac 125  Q
    ||||||| ||| || |||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| ||||  | ||||||  ||||| |    
T  11197269 aaacgttggatatataagagaggagacccataaacccattgccttagggttttgggtaagagtgtggtgtctctctcttagctggtcctaggtgtttagc 11197368  T
Q  126 tcattgccgctccaaacgct 145  Q
     |||||||||||||||||||    
T  11197369 ccattgccgctccaaacgct 11197388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 519 - 580
Target Start/End: Original strand, 922953 - 923014
Alignment:
Q  519 gttgttcactccaaataagggatcgcaatatgttagagaaaagtatgtcttgaccttgtgcg 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  922953 gttgttcactccaaataagggatcgcaatatgttagagaaaagtatatcttgaccttgtgcg 923014  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 407 - 455
Target Start/End: Original strand, 922841 - 922889
Alignment:
Q  407 atgttttgatctatgaaagatggacttagactcagacatttacacacgg 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  922841 atgttttgatctatgaaagatggacttagactcagacatttacacacgg 922889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 41 - 138
Target Start/End: Original strand, 10396189 - 10396286
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctcc 138  Q
    ||||||| |||||||||||||||||| || |||| ||| | |||||| ||||||||||||| |||| || || |||||||||| ||| ||||||||||    
T  10396189 aagagagaagacccataaacccattgccttagggttttaggtaagagggtggtgtctctctcttagcgggtcatagacgtttagctcgttgccgctcc 10396286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 10396474 - 10396534
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    |||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||    
T  10396474 aagagaggagacccataaacccattgccttagggttttggataagagtgtggtctctctct 10396534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 11196995 - 11197098
Alignment:
Q  42 agagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaaa 141  Q
    ||||||||||||| ||||||||||| || |||  ||| | |||||||| ||||||||||| ||||  | ||||||  ||||| | |||||||||||||||    
T  11196995 agagaggagacccttaaacccattgccttaggattttaggtaagagtgaggtgtctctctcttagctggtcctaggtgtttagcccattgccgctccaaa 11197094  T
Q  142 cgct 145  Q
    ||||    
T  11197095 cgct 11197098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 34946456 - 34946393
Alignment:
Q  83 aagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaaacgctt 146  Q
    |||||||| |||||||||| ||||||| ||||||||||||| |  ||||||||||||| |||||    
T  34946456 aagagtgtagtgtctctctcttagtgggtcctagacgtttagcctattgccgctccaagcgctt 34946393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 50002493 - 50002545
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||| ||||||||| | || ||||| |||||||||||||||||||||    
T  50002493 gacccataaatccattgtcttaaggttttgggtaagagtgtggtgtctctctt 50002545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 50630844 - 50630792
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| |||||||||||||||||||||    
T  50630844 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 50630792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 22183353 - 22183302
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    ||||||||||||||||| || | || ||||||||||||||||| ||||||||    
T  22183353 gacccataaacccattgccttaaggttttggataagagtgtggcgtctctct 22183302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 54936263 - 54936314
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    ||||||||||||||||| || | || ||||| ||||||||||||||||||||    
T  54936263 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 54936314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 25483406 - 25483455
Alignment:
Q  53 ccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||| || | || ||||| |||||||||||||||||||||    
T  25483406 ccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 25483455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 18932838 - 18932786
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||| | |||||||||||||||||||||    
T  18932838 gacccataaacccattgccttaaggttttaggtaagagtgtggtgtctctctt 18932786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 22028458 - 22028406
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| |||||||| |  | ||||| |||||||||||||||||||||    
T  22028458 gacccataaactcattgtcttaatgttttgggtaagagtgtggtgtctctctt 22028406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 36608747 - 36608699
Alignment:
Q  53 ccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    ||||||| ||||||||| | || ||||| ||||||||||||||||||||    
T  36608747 ccataaatccattgtcttaaggttttgggtaagagtgtggtgtctctct 36608699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 36629304 - 36629356
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| ||||| || | || ||||| |||||||||||||||||||||    
T  36629304 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 36629356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 43827530 - 43827558
Alignment:
Q  74 ggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||||||||||||||||||    
T  43827530 ggtttggataagagtgtggtgtctctctt 43827558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 45496872 - 45496924
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||| |||||| |||||||| | || ||||| |||||||||||||||||||||    
T  45496872 gacctataaactcattgtcttaaggttttgggtaagagtgtggtgtctctctt 45496924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 49302973 - 49303025
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| |||||||||||||| ||||||    
T  49302973 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtatctctt 49303025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 55933213 - 55933161
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || |  | ||||| |||||||||||||||||||||    
T  55933213 gacccataaacccattgccttaaagttttgggtaagagtgtggtgtctctctt 55933161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 7e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 21416241 - 21416142
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaa 140  Q
    |||||||||||||||||||||||||| || |||| ||||| |||||||||||||||||||| |||| || ||||||| |||||   ||||||||||||||    
T  21416241 aagagaggagacccataaacccattgccttagggttttgggtaagagtgtggtgtctctctcttagcgggtcctagatgtttagtccattgccgctccaa 21416142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 23569099 - 23569007
Alignment:
Q  44 agaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgct 136  Q
    ||||||| ||||||||||||||| || | || ||||| |||||||||| |||||||| |||||||| ||||||||||||| ||||||||||||    
T  23569099 agaggaggcccataaacccattgccttaaggttttgggtaagagtgtgatgtctctcatttagtgggtcctagacgtttagctcattgccgct 23569007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 146
Target Start/End: Complemental strand, 21416531 - 21416426
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaa 140  Q
    ||||| |||||||||||||| | ||||||  ||| ||||| ||||| |||||||||||||| |||| || ||||||| ||| ||| ||||| ||||||||    
T  21416531 aagagcggagacccataaactcgttgtctttgggttttgggtaagaatgtggtgtctctctcttagcgggtcctagatgttcaacccattgtcgctccaa 21416432  T
Q  141 acgctt 146  Q
     |||||    
T  21416431 gcgctt 21416426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 27598025 - 27598092
Alignment:
Q  23 agcaaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgt 90  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||| |||| ||||  |||||||||    
T  27598025 agcaaacgttggatatataagagaggagacccataaacccattgtcttagggttttgcgtaagagtgt 27598092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 11845258 - 11845310
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||| |||||| || | || |||||||||||||||||||||||||||    
T  11845258 gacccataaatccattgccttaaggttttggataagagtgtggtgtctctctt 11845310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 14681579 - 14681627
Alignment:
Q  52 cccataaacccattgtctcaggggtttggataagagtgtggtgtctctc 100  Q
    |||||||||||||||||| | || ||||| |||||||||||||||||||    
T  14681579 cccataaacccattgtcttaaggttttgggtaagagtgtggtgtctctc 14681627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 34218121 - 34218074
Alignment:
Q  54 cataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    |||||||||||||||| | || ||||| ||||||||||||||||||||    
T  34218121 cataaacccattgtcttaaggttttgggtaagagtgtggtgtctctct 34218074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 9901713 - 9901762
Alignment:
Q  53 ccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||| |||||||| | || ||||| |||||||||||||||||||||    
T  9901713 ccataaactcattgtcttaaggttttgggtaagagtgtggtgtctctctt 9901762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 23468 - 23416
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||| |||| || | || ||||| |||||||||||||||||||||    
T  23468 gacccataaacctattgccttaaggttttgggtaagagtgtggtgtctctctt 23416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 1085707 - 1085655
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| ||||||||||| |||||||||    
T  1085707 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 1085655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 29157632 - 29157684
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||| |||||| || | || ||||| |||||||||||||||||||||    
T  29157632 gacccataaatccattgccttaaggttttgggtaagagtgtggtgtctctctt 29157684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 30245144 - 30245196
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| ||||| || | || ||||| |||||||||||||||||||||    
T  30245144 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 30245196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 40094865 - 40094813
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||| |||| | || ||||| ||||||||||| |||||||||    
T  40094865 gacccataaacccatcgtcttaaggttttgggtaagagtgtggcgtctctctt 40094813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 13042579 - 13042662
Alignment:
Q  23 agcaaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttag 106  Q
    ||||||| |||||| || |||||||||||||||||||||||||| || | || |||||||||||||||||||||||||| ||||    
T  13042579 agcaaacattagatatataagagaggagacccataaacccattgccttaaggttttggataagagtgtggtgtctctctcttag 13042662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 13112577 - 13112660
Alignment:
Q  23 agcaaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttag 106  Q
    ||||||| |||||| || ||||||||||||||||||||||||||||| | || |||||||||||||||||||||| ||| ||||    
T  13112577 agcaaacattagatatataagagaggagacccataaacccattgtcttaaggttttggataagagtgtggtgtctttctcttag 13112660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 13042302 - 13042416
Alignment:
Q  31 ttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcatt 130  Q
    |||||| || ||| ||||||||||| |||||||| |||| || | ||| | |||||||||| ||||||||| |||| || ||||||||||||||| ||||    
T  13042302 ttagatatataagtgaggagacccaaaaacccatcgtcttagagtttttggtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccatt 13042401  T
Q  131 gccgctccaaacgct 145  Q
    | |||||||| ||||    
T  13042402 gtcgctccaagcgct 13042416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 13112296 - 13112410
Alignment:
Q  31 ttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcatt 130  Q
    |||||| || ||| ||||||||||| |||||||| |||| || | ||| | |||||||||| ||||||||| |||| || ||||||||||||||| ||||    
T  13112296 ttagatatataagtgaggagacccaaaaacccatcgtcttagagtttttggtaagagtgtgatgtctctctcttagcgggtcctagacgtttaacccatt 13112395  T
Q  131 gccgctccaaacgct 145  Q
    | |||||||| ||||    
T  13112396 gtcgctccaagcgct 13112410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 13043036 - 13043158
Alignment:
Q  23 agcaaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgttt 122  Q
    ||||||| || ||| || ||||||||||||||||||||||||  ||| |||  ||||| ||||||  |||||||||||| ||||  | |||||||| |||    
T  13043036 agcaaacattggatatataagagaggagacccataaacccatcatcttaggattttgggtaagagattggtgtctctctcttagcaggtcctagacattt 13043135  T
Q  123 aactcattgccgctccaaacgct 145  Q
    | | |||||| ||||||| ||||    
T  13043136 agcccattgctgctccaagcgct 13043158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 13113032 - 13113154
Alignment:
Q  23 agcaaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgttt 122  Q
    ||||||| || ||| || ||||||||||||||||||||||||  ||| |||  ||||| ||||||  |||||||||||| ||||  | |||||||| |||    
T  13113032 agcaaacattggatatataagagaggagacccataaacccatcatcttaggattttgggtaagagattggtgtctctctcttagcaggtcctagacattt 13113131  T
Q  123 aactcattgccgctccaaacgct 145  Q
    | | |||||| ||||||| ||||    
T  13113132 agcccattgctgctccaagcgct 13113154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 36389359 - 36389277
Alignment:
Q  62 cattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaaacgct 145  Q
    ||||| || |||| ||||| |||  ||||| ||||||||||||||||| |||| |||||||||| |||||||||||||| ||||    
T  36389359 cattgccttagggttttgggtaacggtgtgatgtctctcttttagtgggtcctggacgtttaac-cattgccgctccaagcgct 36389277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 6500889 - 6500941
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| ||||| || | || |||||||||||||||||||||||||||    
T  6500889 gacccataaactcattgccttaaggttttggataagagtgtggtgtctctctt 6500941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 26074679 - 26074730
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    ||||||||||||||||| || | || ||||| ||||||||||||||||||||    
T  26074679 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 26074730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 35150071 - 35150124
Alignment:
Q  48 gagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    |||||||||||| ||||||||| | || ||||| ||| ||||||||||||||||    
T  35150071 gagacccataaatccattgtcttaaggttttgggtaaaagtgtggtgtctctct 35150124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 36389073 - 36388980
Alignment:
Q  44 agaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctc 137  Q
    ||||||||||||||||| || || || |||| ||||| | |||||||||||| ||||| ||||  | || ||||| |||| | |||||||||||    
T  36389073 agaggagacccataaactcagtgccttagggttttgggtcagagtgtggtgtttctctcttagctggtcttagacatttagcgcattgccgctc 36388980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 9498745 - 9498693
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | |  ||||| |||||||||||||||||||||    
T  9498745 gacccataaacccattgccttaagattttgggtaagagtgtggtgtctctctt 9498693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 40296406 - 40296354
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| ||   || ||||| |||||||||||||||||||||    
T  40296406 gacccataaacccattgccttgaggttttgggtaagagtgtggtgtctctctt 40296354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 11637842 - 11637729
Alignment:
Q  20 tgaagcaaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacg 119  Q
    |||||||||| ||  || || ||||||||| ||||||||||||||||||| | |  ||||||||||||||||||||||||||| ||| |||||||| ||     
T  11637842 tgaagcaaacattgaatatataagagaggatacccataaacccattgtcttaagattttggataagagtgtggtgtctctcttatagcggatcctaaaca 11637743  T
Q  120 tttaactcattgcc 133  Q
    |||| | |||||||    
T  11637742 tttagcccattgcc 11637729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 11638095 - 11638016
Alignment:
Q  59 acccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctcc 138  Q
    |||||||| || |||  ||||| ||||||| |||||||||||| || | || ||||||||||||||| |||| |||||||    
T  11638095 acccattgccttaggattttgggtaagagtatggtgtctctctctttgcgggtcctagacgtttaacccattaccgctcc 11638016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 3058296 - 3058345
Alignment:
Q  53 ccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||| || | || ||||| |||||||||||||||||||||    
T  3058296 ccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 3058345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 1846816 - 1846864
Alignment:
Q  51 acccataaacccattgtctcaggggtttggataagagtgtggtgtctct 99  Q
    ||||||||| |||||| || | || ||||||||||||||||||||||||    
T  1846816 acccataaatccattgccttaaggttttggataagagtgtggtgtctct 1846864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 2377821 - 2377873
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| |||||||||||||||| ||||    
T  2377821 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctttctt 2377873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 3409326 - 3409378
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| ||||| || | || ||||| |||||||||||||||||||||    
T  3409326 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 3409378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 3415525 - 3415577
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||| | |||||||||||||||||||||    
T  3415525 gacccataaacccattgccttaaggtttttggtaagagtgtggtgtctctctt 3415577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 16107749 - 16107797
Alignment:
Q  54 cataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||| || | || ||||| |||||||||||||||||||||    
T  16107749 cataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 16107797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 16454642 - 16454694
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | |  ||||||||||||||||| |||||||||    
T  16454642 gacccataaacccattgccttaagattttggataagagtgtggcgtctctctt 16454694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 29518570 - 29518622
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||  || | || ||||| |||||||||||||||||||||    
T  29518570 gacccataaacccattaccttaaggttttgggtaagagtgtggtgtctctctt 29518622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 29518987 - 29519039
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||  || | || ||||| |||||||||||||||||||||    
T  29518987 gacccataaacccattaccttaaggttttgggtaagagtgtggtgtctctctt 29519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 32741246 - 32741298
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||  || | || ||||| |||||||||||||||||||||    
T  32741246 gacccataaacccattaccttaaggttttgggtaagagtgtggtgtctctctt 32741298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 41 - 145
Target Start/End: Complemental strand, 18829942 - 18829838
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaa 140  Q
    ||||||| | ||| |||||||||||| || |||  |||||||||||||||||| ||| ||| |||| || ||||||||||||| | ||||||||||||||    
T  18829942 aagagagtaaacctataaacccattgccttaggattttggataagagtgtggtatctttctcttagcgggtcctagacgtttagcccattgccgctccaa 18829843  T
Q  141 acgct 145  Q
     ||||    
T  18829842 gcgct 18829838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 3671256 - 3671143
Alignment:
Q  26 aaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaac 125  Q
    ||||||| ||| || ||||||||||| ||||||||| | || || |||| ||||||||| ||| |||||||||||| |||| || || ||||| |||  |    
T  3671256 aaacgttggatatataagagaggagaaccataaacctactgccttagggttttggataatagtttggtgtctctctcttagcgggtcttagacatttcgc 3671157  T
Q  126 tcattgccgctcca 139  Q
    ||||||||||||||    
T  3671156 tcattgccgctcca 3671143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 9483278 - 9483229
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctct 99  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  9483278 gacccataaacccattgtcttaaggttttgggtaagagtgtggtgtctct 9483229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 140
Target Start/End: Complemental strand, 3670914 - 3670800
Alignment:
Q  26 aaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaac 125  Q
    ||||||| ||| || |||||| |||||||||||| ||| |  || |||| ||||||||| | |||||||||||||| || | || || ||||||||| ||    
T  3670914 aaacgttggatatataagagatgagacccataaatccactaccttagggttttggataataatgtggtgtctctctcttggcgggtcttagacgtttcac 3670815  T
Q  126 tcattgccgctccaa 140  Q
     | || |||||||||    
T  3670814 ccgttaccgctccaa 3670800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 30441154 - 30441204
Alignment:
Q  52 cccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||| || | || ||||| |||||||||||||||||||||    
T  30441154 cccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 30441204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 30359338 - 30359391
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttt 103  Q
    ||||||||||||||| | || | || ||||| ||||||||||||||||||||||    
T  30359338 gacccataaacccatagccttaaggttttgggtaagagtgtggtgtctctcttt 30359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 5915934 - 5915986
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| ||||| || | || ||||| |||||||||||||||||||||    
T  5915934 gacccataaactcattgccttaaggttttgggtaagagtgtggtgtctctctt 5915986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 6876953 - 6876901
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||| || |||||||| |||| ||||| |||||||||||||| ||||||    
T  6876953 gacccatacactcattgtcttagggttttgggtaagagtgtggtgtttctctt 6876901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 20870664 - 20870612
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||| || || | |  |||||||||||||||||||||||||||    
T  20870664 gacccataaacccactgccttaagattttggataagagtgtggtgtctctctt 20870612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 48127930 - 48127819
Alignment:
Q  26 aaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaac 125  Q
    ||||||| ||| || ||||||||||||||||||||||||||  | |  | |||||||||||||||||||||| ||| ||||  | |||||||||||||      
T  48127930 aaacgtttgatatataagagaggagacccataaacccattgctttaatgttttggataagagtgtggtgtctttctcttagatggtcctagacgtttagt 48127831  T
Q  126 tcattgccgctc 137  Q
     |||||||||||    
T  48127830 ccattgccgctc 48127819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 48127667 - 48127605
Alignment:
Q  76 tttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctcc 138  Q
    ||||| |||| ||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||    
T  48127667 tttgggtaagtgtgtggtgtctctctcttaatggatcctagacgtttaacccattgccactcc 48127605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 53596539 - 53596625
Alignment:
Q  47 ggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgcc 133  Q
    |||||||||||||||||||| || | |  ||| | ||||||||||||||||||||  ||| || ||||||||||||| |||||||||    
T  53596539 ggagacccataaacccattgacttaagattttaggtaagagtgtggtgtctctctcatagcgggtcctagacgtttagctcattgcc 53596625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 12114653 - 12114601
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||||||||| | || ||||| |||||||||||||||||||||    
T  12114653 gacccataaacccattgtcttaaggttttgggtaagagtgtggtgtctctctt 12114601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 22304046 - 22303994
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || |||||||||||||||||||||||||||    
T  22304046 gacccataaacccattgccttaaggttttggataagagtgtggtgtctctctt 22303994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 53596018 - 53596100
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgttta 123  Q
    |||||||||||||||||||||| ||  || | || ||||| ||||||||||||||||||||  ||  |||||||||| |||||    
T  53596018 aagagaggagacccataaacccgttaccttaaggttttgggtaagagtgtggtgtctctctcataacggatcctagatgttta 53596100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 53596333 - 53596415
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgttta 123  Q
    |||||||||||||||||||||| ||  || | || ||||| ||||||||||||||||||||  ||  |||||||||| |||||    
T  53596333 aagagaggagacccataaacccgttaccttaaggttttgggtaagagtgtggtgtctctctcataacggatcctagatgttta 53596415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 39389137 - 39389186
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctct 99  Q
    |||||||||||||||||||| | || ||||| ||||||||||||||||||    
T  39389137 gacccataaacccattgtcttaaggttttgggtaagagtgtggtgtctct 39389186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 29644993 - 29644941
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||||||||| | || ||||| ||||||||||| |||||||||    
T  29644993 gacccataaacccattgtcttaaggttttgggtaagagtgtggcgtctctctt 29644941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 29644671 - 29644620
Alignment:
Q  51 acccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||||| | || ||||| ||||||||||| |||||||||    
T  29644671 acccataaacccattgtcttaaggttttgggtaagagtgtggcgtctctctt 29644620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 15772921 - 15772973
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| |||||  | | || |||||||||||||||||||||||||||    
T  15772921 gacccataaactcattgctttaaggttttggataagagtgtggtgtctctctt 15772973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 22303750 - 22303698
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| |||||||||||||| ||||||    
T  22303750 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtttctctt 22303698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 22304636 - 22304688
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| ||||| || | || ||||| |||||||||||||||||||||    
T  22304636 gacccataaacacattgccttaaggttttgggtaagagtgtggtgtctctctt 22304688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 45395741 - 45395693
Alignment:
Q  53 ccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    ||||||||||||||||| |  | ||||| ||||||||||||||||||||    
T  45395741 ccataaacccattgtcttaatgttttgggtaagagtgtggtgtctctct 45395693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 28226380 - 28226455
Alignment:
Q  26 aaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    ||||||| ||| || |||||||||||||||||||| |||||||| |||| ||| | ||||||||||||||||||||    
T  28226380 aaacgttggatatataagagaggagacccataaacacattgtcttagggttttaggtaagagtgtggtgtctctct 28226455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 28226713 - 28226811
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaa 140  Q
    |||||||||||| |||||||||||||||| |||  ||||| |||||||||||||||||||| ||   |||||||||||||||| | ||||| | ||||||    
T  28226713 aagagaggagactcataaacccattgtcttaggtttttgg-taagagtgtggtgtctctctctttacggatcctagacgtttagcacattgtcactccaa 28226811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 15511586 - 15511534
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||||||||| | |  ||||| |||||||||||||||||||||    
T  15511586 gacccataaacccattgtcttaagattttgggtaagagtgtggtgtctctctt 15511534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 22062891 - 22062795
Alignment:
Q  44 agaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaactcattgccgctccaa 140  Q
    |||| ||||||||||||  ||||| | | || ||||| |||||||||||||| ||||| |||  || ||||| | ||||| ||||||||||||||||    
T  22062891 agagaagacccataaacttattgttttatggttttgggtaagagtgtggtgtttctctcttaacgggtcctaaatgtttagctcattgccgctccaa 22062795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 30219981 - 30219925
Alignment:
Q  41 aagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtct 97  Q
    ||||||||||||||||||||| ||||||| |||| ||||  || |||||||||||||    
T  30219981 aagagaggagacccataaaccaattgtcttagggttttgtgtaggagtgtggtgtct 30219925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 36178696 - 36178644
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| |||||||||||||||||||||    
T  36178696 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctctt 36178644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 962665 - 962717
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||||||||| | || ||||| |||||||||| |||| |||||    
T  962665 gacccataaacccattgtcttaaggttttgggtaagagtgtgttgtcactctt 962717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 14745385 - 14745333
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| ||||||||||| |||||||||    
T  14745385 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 14745333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 14745758 - 14745706
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| ||||||||||| |||||||||    
T  14745758 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 14745706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 15880330 - 15880382
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| ||||||||||| |||||||||    
T  15880330 gacccataaacccattgccttaaggttttgggtaagagtgtggcgtctctctt 15880382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 35448730 - 35448613
Alignment:
Q  26 aaacgttagatgtagaagagaggagacccataaacccattgtctcaggggtttggataagagtgtggtgtctctcttttagtggatcctagacgtttaac 125  Q
    ||||||| ||| || ||||||||||||| |||||   |||| || || | ||| | |||||||| ||||||||||  |||||||||| ||||||||||      
T  35448730 aaacgtttgatatataagagaggagacctataaattaattgccttagagtttttgttaagagtgcggtgtctctc--ttagtggatcttagacgtttagt 35448633  T
Q  126 tcattgccgctccaaacgct 145  Q
      ||||||||||||| ||||    
T  35448632 ctattgccgctccaagcgct 35448613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 36784351 - 36784299
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||| |||||| | || ||||||||| ||||| |||||||||||    
T  36784351 gacccataaaccctttgtcttaaggttttggataaaagtgttgtgtctctctt 36784299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 5424 - 5476
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | |  |||||||||||||||||||||||||||    
T  5424 gacccataaacccattgccttaagattttggataagagtgtggtgtctctctt 5476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 5048 - 5100
Alignment:
Q  49 agacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    |||||||||||| ||||| || | || ||||| ||||||||||||||||||||    
T  5048 agacccataaactcattgccttatggttttgggtaagagtgtggtgtctctct 5100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 32594807 - 32594755
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||| |||||||| | || ||||| |||||||||||||||||||||    
T  32594807 gacccataaactcattgtcttaaggttttgggtaagagtgtggtgtctctctt 32594755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 39066291 - 39066239
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||  |||||||| | || |||||||||||||||||||||||||||    
T  39066291 gacccataaaatcattgtcttaaggttttggataagagtgtggtgtctctctt 39066239  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 44043863 - 44043811
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||||||||| | |  ||||| |||||||||||||||||||||    
T  44043863 gacccataaacccattgtcttaagattttgggtaagagtgtggtgtctctctt 44043811  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 17294644 - 17294695
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctct 101  Q
    ||||||||||||||||| || | || ||||| ||||||||||||||||||||    
T  17294644 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctctct 17294695  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 26661990 - 26661937
Alignment:
Q  49 agacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||| |||| || | || ||||| |||||||||||||||||||||    
T  26661990 agacccataaaccgattgccttaaggttttgggtaagagtgtggtgtctctctt 26661937  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 45494062 - 45494013
Alignment:
Q  53 ccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    |||||||||||||| || |  | |||||||||||||||||||||||||||    
T  45494062 ccataaacccattgccttaaagttttggataagagtgtggtgtctctctt 45494013  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 29798270 - 29798318
Alignment:
Q  54 cataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||| || | ||  ||||||||||||||||||||||||||    
T  29798270 cataaacccattgccttaaggtcttggataagagtgtggtgtctctctt 29798318  T

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Target: scaffold0702 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 605 - 553
Alignment:
Q  50 gacccataaacccattgtctcaggggtttggataagagtgtggtgtctctctt 102  Q
    ||||||||||||||||| || | || ||||| |||||||||||||||| ||||    
T  605 gacccataaacccattgccttaaggttttgggtaagagtgtggtgtctttctt 553  T

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