View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_160 (Length: 303)
Name: NF1498_high_160
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_160 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 1838559 - 1838296
Alignment:
| Q |
15 |
aatatgaaagataaaaatctatatataccaacaatttgacaccaactaatagatagatatactgaacacaagtaaaaatgagcaaaaatggtggcgtttt |
114 |
Q |
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| T |
1838559 |
aatatgaaagataaaaatctatatataccaacaatttgacaccaactaatagatagatatactgaacacaagtaaaaatg----------gtggcgtttt |
1838470 |
T |
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| Q |
115 |
cttcacatactcgttgaagaaaaagagacgactagggtttttcatataaatctgaaacattcaaccgacctttccatatcccaactttaatggagtactg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1838469 |
cttcacatactcgttgaagaaaaagagacgactagggtttttcatataaatctgaaacattcaaccgacctttccatatcccaactttaatggagtactg |
1838370 |
T |
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| Q |
215 |
aacgacttcttgagcaatcacaatggtattactgcctactttgttggttgggtataaagctacattgacaggga |
288 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1838369 |
aacaacttcttgagcaatcacaatggtattactgcctactttgttggttgggtataaagctacattgacaggga |
1838296 |
T |
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