View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_165 (Length: 296)
Name: NF1498_high_165
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_165 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 86 - 286
Target Start/End: Original strand, 36023172 - 36023372
Alignment:
| Q |
86 |
tgaattttgtgtagaatatgtgttagttatattttatcaaacatcatgaccctaatatcaatatcttaaaaatcgaatgataagacttgttggctacatt |
185 |
Q |
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| T |
36023172 |
tgaattttgtgtagaatatgtgttagttatattttatcaaacatcatgaccctaatatcaatatcttaaaaatcgaatgataagatttattggctacatt |
36023271 |
T |
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| Q |
186 |
ttgattatttgacatttgagtgggttgagggcgatttcatttaaataggatggtaaaattaaagtaacacatttgaattagtttagtggtgttagtctgt |
285 |
Q |
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| T |
36023272 |
ttgattgtttgacgtttgagtgggttgagggcgatttcatttaaataggatggtaaaattaaagtaacacatttgaattagtttagtggtgttagtttgt |
36023371 |
T |
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| Q |
286 |
g |
286 |
Q |
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| T |
36023372 |
g |
36023372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 36023105 - 36023151
Alignment:
| Q |
18 |
tatatgagtgctataaattttggatcattaattttgattcttatttt |
64 |
Q |
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| T |
36023105 |
tatatgagtgctataaattttggatcactaattttgattcttatttt |
36023151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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