View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_166 (Length: 295)

Name: NF1498_high_166
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_166
NF1498_high_166
[»] chr5 (6 HSPs)
chr5 (59-287)||(39570144-39570372)
chr5 (59-200)||(39574615-39574745)
chr5 (212-281)||(1826254-1826323)
chr5 (214-281)||(19357368-19357435)
chr5 (212-281)||(9827783-9827852)
chr5 (212-281)||(11607641-11607710)
[»] chr2 (4 HSPs)
chr2 (212-287)||(21603954-21604029)
chr2 (212-271)||(7381687-7381746)
chr2 (212-281)||(34392188-34392257)
chr2 (212-279)||(37358030-37358097)
[»] chr8 (2 HSPs)
chr8 (212-287)||(41179664-41179739)
chr8 (218-265)||(32825958-32826005)
[»] chr3 (8 HSPs)
chr3 (212-279)||(44380249-44380316)
chr3 (212-281)||(10179870-10179939)
chr3 (212-281)||(10018673-10018742)
chr3 (212-280)||(32319473-32319541)
chr3 (219-279)||(39498778-39498838)
chr3 (212-279)||(47426345-47426412)
chr3 (212-271)||(50934495-50934554)
chr3 (212-281)||(10123213-10123282)
[»] scaffold0263 (1 HSPs)
scaffold0263 (218-265)||(23094-23141)
[»] scaffold0032 (1 HSPs)
scaffold0032 (212-271)||(34189-34248)
[»] chr4 (8 HSPs)
chr4 (212-287)||(33249475-33249550)
chr4 (212-287)||(12473699-12473774)
chr4 (212-287)||(12528108-12528183)
chr4 (212-287)||(55590477-55590552)
chr4 (214-271)||(22343334-22343391)
chr4 (215-287)||(35869672-35869744)
chr4 (212-287)||(21260789-21260864)
chr4 (212-287)||(51811909-51811984)
[»] chr1 (6 HSPs)
chr1 (212-271)||(25161304-25161363)
chr1 (212-287)||(32676131-32676206)
chr1 (212-271)||(29119441-29119500)
chr1 (212-270)||(46435571-46435629)
chr1 (212-287)||(8462124-8462198)
chr1 (217-287)||(2569037-2569107)
[»] chr7 (1 HSPs)
chr7 (212-287)||(35341531-35341606)
[»] chr6 (3 HSPs)
chr6 (217-281)||(11753167-11753231)
chr6 (212-265)||(1211967-1212020)
chr6 (212-280)||(32644944-32645012)
[»] scaffold0229 (1 HSPs)
scaffold0229 (212-265)||(13129-13182)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 59 - 287
Target Start/End: Complemental strand, 39570372 - 39570144
Alignment:
Q  59 tatgacataagaaatgagtaacaataggattgaaggagagtgtgtgatacctaaagaagaagctcctccactgctatcgctgtgcctctcttactctctg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39570372 tatgacataagaaatgagtaacaataggattgaaggagagtgtgtgatacctaaagaagaagctcctccactgctatcgctgtgcctctcttactctctg 39570273  T
Q  159 aacgctttgcctataactatgataatcttaagcaggctgttaagcgcgccggaggattccacttgtgtatcattaaagtatcaatggtatatactattgg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  39570272 aacgctttgcctataactatgataatcttaagcaggctgttaagcgcgccgggggattccacttgtgtatcattaaagtatcaatggtatataccattgg 39570173  T
Q  259 ccaattaaagtgtatcacctacctatgtt 287  Q
    ||||||| ||||| ||||||||| |||||    
T  39570172 ccaattagagtgtgtcacctaccaatgtt 39570144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 39574745 - 39574615
Alignment:
Q  59 tatgacataagaaatgagtaacaataggattgaaggagagtgtgtgatacctaaagaagaagctcctccactgctatcgctgtgcctctcttactctctg 158  Q
    |||||||||||| |||| ||| ||||| |||  ||||||||||||||||||||||||||||| ||||||||||||| ||||||           || |||    
T  39574745 tatgacataagagatgaataataatagcatttgaggagagtgtgtgatacctaaagaagaagatcctccactgctaccgctgt-----------tcgctg 39574657  T
Q  159 aacgctttgcctataactatgataatcttaagcaggctgtta 200  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  39574656 aacgctttgcctacaactatgataatcttaagcaggttgtta 39574615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 1826254 - 1826323
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    |||| ||||||||||| |||||||||| ||||||||||||| ||||| |||||| ||||| |||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctacc 1826323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 19357435 - 19357368
Alignment:
Q  214 attccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    |||||||||||||| |||||  ||| ||||||||||||| |||||||||||| |||||  ||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctacc 19357368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Original strand, 9827783 - 9827852
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    |||||||||||||||| |||||| ||| |||||||||||||  || | |||||| |||||| ||||||||    
T  9827783 ggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctacc 9827852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 11607710 - 11607641
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    ||||||||||||| || |||||| ||| ||||||||||||| |||| ||||||| |||||  ||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctacc 11607641  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 21603954 - 21604029
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||||||||||||||| |||||| ||| ||||||||||||| |||| ||||||| ||||||||||||||| |||||    
T  21603954 ggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgtt 21604029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 7381687 - 7381746
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgt 271  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||||||||||| |||||    
T  7381687 ggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgt 7381746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 34392257 - 34392188
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    |||||||||||||||| |||| | ||| ||||||||||||| |||||||||||| |||||  ||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctacc 34392188  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 37358097 - 37358030
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcaccta 279  Q
    ||||||||||||||||||||||| ||| ||||| ||||||| |||| | ||||| ||||| |||||||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcaccta 37358030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 41179739 - 41179664
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||||||||||||||| |||||| ||| ||||| ||||||  |||||||||||||||||| ||||||||| |||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgtt 41179664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 32826005 - 32825958
Alignment:
Q  218 cacttgtgtatcattaaagtatcaatggtatatactattggccaatta 265  Q
    |||||||||| |||||||||||||||| | ||||| ||||||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaatta 32825958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 44380249 - 44380316
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcaccta 279  Q
    |||||||||||||||| |||||| ||| |||||||||||||||||| ||||||| ||||| |||||||    
T  44380249 ggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcaccta 44380316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 10179939 - 10179870
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    |||||||||||||||| |||||||||| ||||||||||||| ||||| |||||| |||||  ||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctacc 10179870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 10018742 - 10018673
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    |||||||||||||||| |||||||||| ||||| ||||||| ||||| |||| |||||||  ||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctacc 10018673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 32319541 - 32319473
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctac 280  Q
    |||||| ||||||||| |||||| ||| ||||||||||||| |||||||||||| |||||  |||||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctac 32319473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 39498838 - 39498778
Alignment:
Q  219 acttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcaccta 279  Q
    ||||||||| |||||||||| ||||| |||||| |||||| |||||||||||| |||||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcaccta 39498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 47426345 - 47426412
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcaccta 279  Q
    |||| ||||||||||| |||||| ||| |||| |||||||| |||||||||||| ||||| |||||||    
T  47426345 ggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcaccta 47426412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 50934495 - 50934554
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgt 271  Q
    ||||| |||||||||| |||||| ||| ||||||||||||| |||||||||||| |||||    
T  50934495 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgt 50934554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 10123282 - 10123213
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    |||||||||||||||| |||||||||||||||| ||||||  | ||| |||| |||||||  ||||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctacc 10123213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 265
Target Start/End: Original strand, 23094 - 23141
Alignment:
Q  218 cacttgtgtatcattaaagtatcaatggtatatactattggccaatta 265  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaatta 23141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 34189 - 34248
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgt 271  Q
    |||||||||||||||| |||||| ||| |||||||||||| ||||||||||||| |||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgt 34248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 33249550 - 33249475
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    ||||| |||||||||| |||||| |||  |||||||||||| |||||||||||| ||||| ||||||||| |||||    
T  33249550 ggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgtt 33249475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 12473699 - 12473774
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||| |||||||| || |||||| ||| ||||||||||||| |||||||||||| |||||  |||||||| |||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgtt 12473774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 12528108 - 12528183
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||| |||||||| || |||||| ||| ||||||||||||| |||||||||||| |||||  |||||||| |||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgtt 12528183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 55590477 - 55590552
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||||||||||||||| |||||| ||| ||||||||||||  ||||  |||||| ||||| ||||||||| |||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtt 55590552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 22343334 - 22343391
Alignment:
Q  214 attccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgt 271  Q
    |||||||||||||| |||||| ||||||||||||||||  |||| ||||||| |||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgt 22343391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 287
Target Start/End: Complemental strand, 35869744 - 35869672
Alignment:
Q  215 ttccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    ||||||||||||| |||||| ||| ||||||||||||| |||| ||||||| | |||  |||||||| |||||    
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgtt 35869672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 21260789 - 21260864
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    ||||||||||| | || |||||| ||| ||||| ||||||  |||||||||||| ||||| ||||||||| |||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgtt 21260864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 51811909 - 51811984
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||||||||| ||||| |||||| ||||||| | |||||| ||||||||||||| ||| |  |||||||| |||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgtt 51811984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 25161304 - 25161363
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgt 271  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||| ||||||| |||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgt 25161363  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 32676131 - 32676206
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||||||||||||||| |||||| ||| ||||||||||||| |||||||||||| | || | |||||||| |||||    
T  32676131 ggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgtt 32676206  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 29119500 - 29119441
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgt 271  Q
    |||| ||||||||||| |||||| ||| ||||||||||||| |||||||||||| |||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgt 29119441  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 46435629 - 46435571
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtg 270  Q
    |||| ||||||||||| |||||| ||| ||||||||||||| |||||||||||| ||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtg 46435571  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 8462124 - 8462198
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    ||||||||||||||||| ||||||||| ||||||||||||  ||||  |||||| |||||  |||||||| |||||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgtt 8462198  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 2569037 - 2569107
Alignment:
Q  217 ccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    ||||||||||| |||||| ||| ||||||||||||  ||| |||||||| |||||  |||||||| |||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgtt 2569107  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 287
Target Start/End: Original strand, 35341531 - 35341606
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacctatgtt 287  Q
    |||||||||||||||| |||||| ||| ||||| ||||||| |||| ||||||| |||||  |||||||| |||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgtt 35341606  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 11753167 - 11753231
Alignment:
Q  217 ccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctacc 281  Q
    ||||||||||| |||||| ||| ||||||||||||| || ||||||||| |||||  ||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacc 11753231  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 1212020 - 1211967
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaatta 265  Q
    ||||| |||||||||| |||||| ||| ||||||||||||| |||||| |||||    
T  1212020 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaatta 1211967  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 32645012 - 32644944
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaattaaagtgtatcacctac 280  Q
    ||||||||| |||||| ||||||  |||| || |||||||  ||||||||||||| |||| ||||||||    
T  32645012 ggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctac 32644944  T

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Target: scaffold0229 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 13182 - 13129
Alignment:
Q  212 ggattccacttgtgtatcattaaagtatcaatggtatatactattggccaatta 265  Q
    ||||| |||||||||| |||||| ||| ||||||||||||| |||||| |||||    
T  13182 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaatta 13129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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