View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_171 (Length: 292)
Name: NF1498_high_171
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_171 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 3648903 - 3648622
Alignment:
| Q |
1 |
ccaaataagggtatggaccaggaccttcattataacgatagaaacatgtattatttatttttgcaagagcggaatttaattactctcgtgaatttgggag |
100 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3648903 |
ccaaataagggtatggaccaggaccttcattattatgatagaaacatgtattatttatttttgcaagagcggaatttaattactctcgtgaatttgggag |
3648804 |
T |
|
| Q |
101 |
tatgctggtaaagacttcagatggcttgcatctactatcagattttgttagaatatcaatggtgagtaagtcttatgttggatgaaaatatggatattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3648803 |
tatgctggtaaagacttcagatggcttgcatctactatcagattttgttagaatatcaatggtgagtaagtcttatgttggatgaaaatatggatattga |
3648704 |
T |
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| Q |
201 |
aaagcaaatacctattgtctcattgttaaaaagaaaacataaacctattatcttaagattttacgtgatgatttaatgttca |
282 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3648703 |
aaagcaaatacctatcgtctcattgttaaaaagaaaacataaacctattatcttaagattttacgtgatgatttaatgttca |
3648622 |
T |
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