View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_172 (Length: 291)
Name: NF1498_high_172
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_172 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 55067198 - 55066921
Alignment:
| Q |
1 |
ttcactcaagttgtttctgtgttggcttacttgttttccctcatttcgtattcaaagagaaacctgaatacaatgccttgtatttttctctatacattag |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067198 |
ttcactcaagttgtttctgtgctggcttacttgttttccctcagtttgtattcaaagagaaacctgaatacaatgccttgtatttttctctatacattag |
55067099 |
T |
|
| Q |
101 |
ttcatcactacgcatagggtatatcttctatctactgtatatatgtttgaactgccgttttccccacaattatcagatggttcttactagacccttgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067098 |
ttcatcactacgcatagggtatatcttctatctactatatatatgtttgaacttccggtttccccacaattatcagatggttcttactagacccttgttt |
55066999 |
T |
|
| Q |
201 |
gctacatgggttaatgttactggttattctcgataagtgatgcataagaataagatggcaaatagactttcattgcct |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55066998 |
gctacatgggttaatgttactggttattctcgataagtgatacataagaataagatggcaaatagactttcattgcct |
55066921 |
T |
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