View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_176 (Length: 289)
Name: NF1498_high_176
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_176 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 278
Target Start/End: Complemental strand, 29468552 - 29468296
Alignment:
| Q |
20 |
aatatgttcaaaaaatattgtcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468552 |
aatatgttcaaaaaatattgtcaaacaagaaaaggttaatgttgtcttcatgcctcgttgagcttacaatgaaaggtttcaaaagacctaccggcatgtc |
29468453 |
T |
|
| Q |
120 |
caacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatcacaaagtatgtaannnnnnnngtcctt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
29468452 |
caacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttctcgcacagctgaatcacaaagtatgtaa--ttttttgtcctt |
29468355 |
T |
|
| Q |
220 |
attacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcat |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29468354 |
attacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcat |
29468296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 14999603 - 14999520
Alignment:
| Q |
108 |
taccggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaactaaaacactaccttatttgttgcacagctgaatca |
193 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
14999603 |
taccagcatgtccaacctaaaaagttt--gagcatcaacctcattcaaaactaaaaaactacattatttgttgcacagctgaatca |
14999520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 14999501 - 14999445
Alignment:
| Q |
220 |
attacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttc |
276 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
14999501 |
attacatgtctttggcatgagaatcacataattttcctctttttgtcattgtttttc |
14999445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University