View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_18 (Length: 598)
Name: NF1498_high_18
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 196 - 582
Target Start/End: Original strand, 25738675 - 25739057
Alignment:
| Q |
196 |
acaatgttgtatatttaattatggtgtttgttgacagtataactatgtaaaaatggagtgaaagttcacgatatggtttttcaatgtttgcattctcttt |
295 |
Q |
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| T |
25738675 |
acaatgttgtatatttaattatggtgtttgttgacagtataactatgtaaaaatggagtgaaagttcacgatatggtttttcaatgtttgcattctcttt |
25738774 |
T |
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| Q |
296 |
ctctattattgtctaggatgtgatatcttaagtaatgagaatggaaaataagaaacattcgatttatagaaagtttacttgaaattcaactcgatgtagg |
395 |
Q |
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| T |
25738775 |
----attattgtctaggatgtgatatcttaagtaatgagaatggaaaataagaaacattcgatttatagaaagtttacttgaaattcaactcgatgtagg |
25738870 |
T |
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| Q |
396 |
ctgtttgttatggcaactattatggacactcgaagtatcatttatgcagaagtttctcgccagcacagcagaatgcagaccatggaatcctgtagaattc |
495 |
Q |
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| T |
25738871 |
ctgtttgttatggcaactattatggacactcgaagtatcatttatgcagaagtttctcgccagcacagcagaatgcagaccatggaatcctgtagaattc |
25738970 |
T |
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| Q |
496 |
tgagtgtgctgggagtcttttttggaagttattttgaaagaaatgagaatcacatggtgattcaagattatcttggctatttggttg |
582 |
Q |
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| T |
25738971 |
tgagtgtgctgggagtcttttttggaagttattttgaaagaaatgagaatcacatggtgattcaagattatcttggctatttggttg |
25739057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 25738488 - 25738631
Alignment:
| Q |
9 |
gattattctagaaatttcgacgtgaatgacctgatctccataagcaacgacctcgttaaggttttgaaagatcctgctaatgatcgtgaactcaacatcc |
108 |
Q |
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| T |
25738488 |
gattattctagaaatttcgacgtgaatgatctgatctccataagcaacgacctcgttaaggttttgaaagatcctgctaatgatcgtgaactcaacatcc |
25738587 |
T |
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| Q |
109 |
tctgtcaatgtctcctttttcactcttccatttctgcgtgaaaa |
152 |
Q |
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| T |
25738588 |
tctgtcaatgtctcctttttcactcttccatttctgcgtgaaaa |
25738631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 25744898 - 25745040
Alignment:
| Q |
9 |
gattattctagaaatttcgacgtgaatgacctgatctccataagcaacgacctcgttaaggttttgaaagatcctgctaatgatcgtgaactcaacatcc |
108 |
Q |
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| T |
25744898 |
gattattctagaaacttcgatgtgaatgacctgatctccataagtaacgacctcgttaagggtttgaaagatcctcctaatgatcgtgaactcaacatcc |
25744997 |
T |
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| Q |
109 |
tctgtcaatgtctcctttttcactcttccatttctgcgtgaaaa |
152 |
Q |
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| T |
25744998 |
tct-tttctctcttcctttttactcttccatttctgcttgaaaa |
25745040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 45304413 - 45304322
Alignment:
| Q |
231 |
agtataactatgtaaaaatggagtgaaagttcacgatatggtttttcaatgtttgcattctctttctctattattgtctaggatgtgatatc |
322 |
Q |
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| T |
45304413 |
agtataactatgtaaaaatggagtggaagtttgcaatatggtttttcaatatttgcattctctttctctatcattgtcttagatgtggtatc |
45304322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 45305037 - 45304923
Alignment:
| Q |
9 |
gattattctagaaatttcgacgtgaatgacctgatctccataagcaacgacctcgttaaggttttgaaagatcctgctaatgatcgtgaactcaacatcc |
108 |
Q |
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|||| ||||||||| ||||||||| || | || || |||||||||||||||||| || |||||||| ||||||| |||||||| ||||| ||||||||| |
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| T |
45305037 |
gattcttctagaaacttcgacgtggatcagcttatttccataagcaacgacctcattgaggttttgcaagatcccgctaatgaccgtgatctcaacatca |
45304938 |
T |
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| Q |
109 |
tctgtcaatgtctcc |
123 |
Q |
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| T |
45304937 |
tctctcaatgtctcc |
45304923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 496
Target Start/End: Complemental strand, 45303206 - 45303146
Alignment:
| Q |
436 |
tttatgcagaagtttctcgccagcacagcagaatgcagaccatggaatcctgtagaattct |
496 |
Q |
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| T |
45303206 |
tttatgcagaagtttctggtcagcacaacaggacgcagaccgtggaagcctgtagaattct |
45303146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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