View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_181 (Length: 285)
Name: NF1498_high_181
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_181 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 2918878 - 2918623
Alignment:
| Q |
22 |
ggagtaattttattccatcttttctatgaaaatgtcataaattcccaagttatggaatattttgtttaatacagggaccatggcgctgagaaggaatatc |
121 |
Q |
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| T |
2918878 |
ggagtaattttattccatcttttctatgaaaatgtcataaattcccaagttatggaatattttgtttaatacagggaccatggtgctgagaaggaatatc |
2918779 |
T |
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| Q |
122 |
ttgtgaagtggaaagagcttccttatgatgaatgccattgggagcttgagtcagatatctctttgtttcaggcagaaatagagagattcaatatatttcg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918778 |
ttgtgaagtggaaagagcttccttatgatgaatgccattgggagcttgagtcagatatctctttgtttcaggcagaaatagagagattcaatatatttcg |
2918679 |
T |
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| Q |
222 |
ttctaggtctaggaggatttcttattgtaagcaaaaaggcagtgttagtgatgatg |
277 |
Q |
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| T |
2918678 |
ttctaggtctaggaagatttcttattgtaagcaaaaaggcagtgttagtgatgatg |
2918623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 7224395 - 7224139
Alignment:
| Q |
22 |
ggagtaattttattccatcttttctatgaaaatgtcataaa-ttcccaagttatggaatattttgtttaatacagggaccatggcgctgagaaggaatat |
120 |
Q |
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||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
7224395 |
ggagtaattttattccatcttttttatgaaaatgtcgtaaaattcccaagttaaggaatattttgtttaatacagggacaatggtgctgagaaggaatat |
7224296 |
T |
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| Q |
121 |
cttgtgaagtggaaagagcttccttatgatgaatgccattgggagcttgagtcagatatctctttgtttcaggcagaaatagagagattcaatatatttc |
220 |
Q |
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| T |
7224295 |
cttgtgaagtggaaagagcttccttatgatgaatgccattgggagcttgagtcagatatctcttcgttttaggcagaaatagagagattcaatatatttg |
7224196 |
T |
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| Q |
221 |
gttctaggtctaggaggatttcttattgtaagcaaaaaggcagtgttagtgatgatg |
277 |
Q |
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||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |
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| T |
7224195 |
gttctaggtctaggaagatttcttatagtaagcaaaaaaacagtgttagtgatgatg |
7224139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 49037919 - 49038038
Alignment:
| Q |
108 |
tgagaaggaatatcttgtgaagtggaaagagcttccttatgatgaatgccattgggagcttgagtcagatatctctttgtttcaggcagaaatagagaga |
207 |
Q |
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||||| ||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||| ||||| ||| |||||| | |||||||| ||| |
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| T |
49037919 |
tgagagggaatatctggtgaagtggaaagagcttccatatgatgaatgttattgggaatctgagtctgatatttctgcatttcagccggaaatagaaaga |
49038018 |
T |
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| Q |
208 |
ttcaatatatttcgttctag |
227 |
Q |
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|| |||| |||||||||||| |
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| T |
49038019 |
tttaatagatttcgttctag |
49038038 |
T |
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