View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_186 (Length: 281)

Name: NF1498_high_186
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_186
NF1498_high_186
[»] chr1 (4 HSPs)
chr1 (1-264)||(4677430-4677693)
chr1 (20-254)||(34465148-34465382)
chr1 (13-213)||(15596021-15596220)
chr1 (171-228)||(52549023-52549080)
[»] chr7 (24 HSPs)
chr7 (1-264)||(1302260-1302523)
chr7 (1-264)||(8660193-8660456)
chr7 (14-235)||(3148333-3148554)
chr7 (1-225)||(8655298-8655522)
chr7 (5-228)||(8668418-8668641)
chr7 (19-228)||(6790377-6790586)
chr7 (56-253)||(7876735-7876932)
chr7 (11-263)||(8647660-8647912)
chr7 (21-228)||(13332076-13332283)
chr7 (21-216)||(10492939-10493134)
chr7 (21-235)||(27829264-27829478)
chr7 (21-225)||(8630197-8630401)
chr7 (5-220)||(8584470-8584685)
chr7 (20-213)||(17269068-17269261)
chr7 (50-231)||(8610662-8610843)
chr7 (56-204)||(8602738-8602886)
chr7 (20-156)||(17261360-17261496)
chr7 (65-150)||(8591411-8591496)
chr7 (50-140)||(8582661-8582751)
chr7 (65-140)||(8635513-8635588)
chr7 (98-153)||(8546721-8546776)
chr7 (56-231)||(29581088-29581263)
chr7 (56-138)||(8104069-8104151)
chr7 (56-140)||(29577003-29577087)
[»] chr4 (5 HSPs)
chr4 (5-228)||(9322990-9323213)
chr4 (5-228)||(9377469-9377692)
chr4 (5-228)||(9334962-9335184)
chr4 (2-229)||(30776067-30776294)
chr4 (20-222)||(35133422-35133624)
[»] chr5 (2 HSPs)
chr5 (21-231)||(42554110-42554320)
chr5 (11-227)||(28220906-28221122)
[»] chr2 (9 HSPs)
chr2 (55-230)||(16656524-16656699)
chr2 (17-228)||(12244329-12244540)
chr2 (18-217)||(43626286-43626485)
chr2 (21-150)||(12257918-12258047)
chr2 (20-228)||(12235766-12235974)
chr2 (21-228)||(14705432-14705639)
chr2 (11-217)||(16661003-16661209)
chr2 (20-132)||(7543245-7543357)
chr2 (20-132)||(12000301-12000413)
[»] chr8 (2 HSPs)
chr8 (21-216)||(43745793-43745985)
chr8 (55-153)||(12529871-12529969)
[»] chr6 (1 HSPs)
chr6 (10-90)||(28911272-28911352)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 4677693 - 4677430
Alignment:
Q  1 agagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4677693 agagaatagaaatagaaatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcatcagtaaaa 4677594  T
Q  101 gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4677593 gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc 4677494  T
Q  201 caagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaag 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4677493 caagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaag 4677430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 34465382 - 34465148
Alignment:
Q  20 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg 119  Q
    |||||||| |||||||| |  | |||||| |||| ||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||| |    
T  34465382 ttaccaaaaacagtgttctgtgggttggtagcagtttgattcttagcagcattaccgatcaatctttgatcatgagtaaaagcaacaaaagaaggtgtgg 34465283  T
Q  120 ttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagc 219  Q
    || |||| ||||| ||||||| ||||||||| |||||  |||| |  ||| |||| || ||||||||||| || || || ||||| ||||||||||||||    
T  34465282 ttgtgttaccttggtcattgtcaataatctctactctactgtgttgttcctgccatactgcaacacatgagtaggttgtgccaaggtctattcccacagc 34465183  T
Q  220 acgtccttcatactttacccccatgatctttcaaa 254  Q
    |||||||||| | |||  | |||||||||||||||    
T  34465182 acgtccttcacattttttcgccatgatctttcaaa 34465148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 15596021 - 15596220
Alignment:
Q  13 tagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaa 112  Q
    |||| ||||||||||||| |||||||  | || || ||||| |||| |||||||||||| |||||||||||||||||| | ||| |||| ||||||||||    
T  15596021 tagaaatttaccaaagac-gtgtttttggggtcggaggcagcttgactcttagcagcatcaccaatcaacctttgatcattagtgaaagaaacaaaagaa 15596119  T
Q  113 ggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattc 212  Q
    |||||  || |||| ||||| |||||||  |||||||| ||||| || || |  || ||||||||||||||||| ||||| || |||||||| |||||||    
T  15596120 ggtgtaattctgtttccttggtcattgtggataatctcgactctattctgttcatcaagccacacagcaacacaagaatacgttgttccaaggtctattc 15596219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 52549080 - 52549023
Alignment:
Q  171 gccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttc 228  Q
    |||| ||||||||||||||||| ||||| | ||| ||||||||||||||| |||||||    
T  52549080 gccatacagcaacacatgaatacgtagtacaaaggtctattcccacagcaagtccttc 52549023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1302260 - 1302523
Alignment:
Q  1 agagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaa 100  Q
    |||||||| ||| ||| |||||||||| ||||| |||||||  ||||| ||||  |||||||||||||||| ||| |||||||||||||| || || |||    
T  1302260 agagaatacaaagagaaatttaccaaaaacagtattttcaggattggttgcagcctgattcttagcagcatcaccgatcaacctttgatcatcggtgaaa 1302359  T
Q  101 gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc 200  Q
    ||||||||||| |||||||||||||||||||| || ||||| || ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  1302360 gcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacacagcaacacacgaataagtagttc 1302459  T
Q  201 caagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaag 264  Q
    |||| |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  1302460 caaggtctattccaacagcacgtccttcgtactttatcgccatgatctttcaaataatcaaaag 1302523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 8660193 - 8660456
Alignment:
Q  1 agagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaa 100  Q
    |||||||| ||||||| ||| |||||| ||||||||| |||  ||||| ||||  |||||||||||||||| |||||||||||||||||||||||| |||    
T  8660193 agagaatacaaatagaaattaaccaaaaacagtgtttacaggattggttgcagcctgattcttagcagcatcaccaatcaacctttgatcgtcagtgaaa 8660292  T
Q  101 gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc 200  Q
    |||||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||  ||||||||||||||||||||||||||||| ||||| || ||||    
T  8660293 gcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgattgtgattctccagccacacagcaacacacgaataggttgttc 8660392  T
Q  201 caagatctattcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaag 264  Q
    |||| |||||||| | |||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  8660393 caaggtctattccaatagcacgtccttcgtactttatccccatgatcgttcaaataatcaaaag 8660456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 3148333 - 3148554
Alignment:
Q  14 agatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaag 113  Q
    |||||||||||||| ||||||||||||| ||| |||| || ||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||    
T  3148333 agatatttaccaaaaacagtgttttcagggtttgtgggagcttgattcttagcagcatcaccaaccaacctttgatcatcagtgaaagcaacaaaagaag 3148432  T
Q  114 gtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcc 213  Q
    |||| |||||||||||||| ||||||| ||||||||| ||||||||||| |  || ||||| |||||||| || ||||| || |||||||| || |||||    
T  3148433 gtgtggttttgttgccttggtcattgtgaataatctcaactctgttgtgctcatcgagccaaacagcaacgcacgaatacgttgttccaaggtcgattcc 3148532  T
Q  214 cacagcacgtccttcatacttt 235  Q
    ||| |||| |||||| ||||||    
T  3148533 cactgcacatccttcgtacttt 3148554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8655298 - 8655522
Alignment:
Q  1 agagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaa 100  Q
    |||||||| ||||||| |||||||||| ||||||||||| | |||||| ||||||||||||| |||  |||| ||||||||||||||||  ||||| |||    
T  8655298 agagaataaaaatagaaatttaccaaatacagtgttttcggggttggtagcagattgattctcagctccattgccaatcaacctttgataatcagtgaaa 8655397  T
Q  101 gcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttc 200  Q
    ||||||| ||||||||| ||| | |||||||| ||||||| ||||||||| ||||| |||||||  || ||||||||||||||||||||||| || ||||    
T  8655398 gcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacacagcaacacatgaataggttgttc 8655497  T
Q  201 caagatctattcccacagcacgtcc 225  Q
    | || |||||||| |||||||||||    
T  8655498 cgaggtctattccgacagcacgtcc 8655522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 8668418 - 8668641
Alignment:
Q  5 aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa 104  Q
    |||||||||||| |||||||||||| ||||||||||| ||| || ||||||||||||||||||||||  |||||||||||||| || |   | |||||||    
T  8668418 aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcgccaatcaacctttgttcattgttgaaagcaa 8668517  T
Q  105 caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag 204  Q
    |||||||||||||| ||  ||| ||||| ||||||| ||||||||| ||||| | ||| |  || ||||||||||||||||||||||| || ||||||||    
T  8668518 caaaagaaggtgttattcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacatgaataggttgttccaag 8668617  T
Q  205 atctattcccacagcacgtccttc 228  Q
    |||||||||||| |||||||||||    
T  8668618 atctattcccactgcacgtccttc 8668641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 6790377 - 6790586
Alignment:
Q  19 tttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgtt 118  Q
    |||||| |||| ||||||||  | ||||||||||| ||||| ||||||||||| ||| ||||||||||| || || || ||||||||||||||||||||     
T  6790377 tttaccgaagatagtgttttgcgggttggtggcagcttgatacttagcagcatcaccgatcaacctttggtcatcggtgaaagcaacaaaagaaggtgtg 6790476  T
Q  119 gttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacag 218  Q
    |||||||| ||||| ||||||| ||||||||| ||||| ||||| |  || ||||||||| ||||||| ||||| || ||||| || |||||||||||||    
T  6790477 gttttgttaccttggtcattgtgaataatctcaactctattgtgttcatcaagccacacaccaacacaagaatatgttgttcccaggtctattcccacag 6790576  T
Q  219 cacgtccttc 228  Q
    ||| ||||||    
T  6790577 cacatccttc 6790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 56 - 253
Target Start/End: Complemental strand, 7876932 - 7876735
Alignment:
Q  56 tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactc 155  Q
    ||||| || ||||||| |||||||||||||||||| |  || |||||||||||||||||||||||| |||||||||||||||||| |||||| || ||||    
T  7876932 tgatttttggcagcatcaccaatcaacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactc 7876833  T
Q  156 tgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcatactttacccccatgatctttcaa 253  Q
    | ||||| |  || ||||||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||| || |||  | |||| |||||||||    
T  7876832 tattgtgttcatcaagccacacagcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtattttttcgccataatctttcaa 7876735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 263
Target Start/End: Original strand, 8647660 - 8647912
Alignment:
Q  11 aatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaag 110  Q
    |||||| |||||||||||||||||||   || ||| |  ||||  ||||| ||||| |||| |||||||||||||||||| || || |||||||||||||    
T  8647660 aatagaaatttaccaaagacagtgttggtagggttagaagcagcctgatttttagcggcatcaccaatcaacctttgatcatcggtgaaagcaacaaaag 8647759  T
Q  111 aaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctat 210  Q
    ||||||| ||| |||| ||||| ||||||| ||||||||| ||||| ||||| |  || ||||||||||||||||| ||||| || |||||||| |||||    
T  8647760 aaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacacagcaacacacgaatacgttgttccaaggtctat 8647859  T
Q  211 tcccacagcacgtccttcatactttacccccatgatctttcaaataatcaaaa 263  Q
    |||||| ||| ||||||| |  |||  | |||||||||||||| ||| |||||    
T  8647860 tcccactgcaagtccttcgtgttttttcgccatgatctttcaagtaaacaaaa 8647912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 13332283 - 13332076
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| ||||||||| |||||||| |   | |||||||||||||||||||| ||    
T  13332283 taccaaagatagtgttttcagggttagtggcagattgattcttggcagcatcaccaatcaatctttgatcattgttgaaagcaacaaaagaaggtgtagt 13332184  T
Q  121 tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca 220  Q
    | | || ||||| ||||||| ||||||||| ||||| | ||| |  || |||||||||||||||||||| || || |||||||| || |||||||| |||    
T  13332183 tctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggttgttccaaggtcgattcccactgca 13332084  T
Q  221 cgtccttc 228  Q
    ||||||||    
T  13332083 cgtccttc 13332076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 10493134 - 10492939
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||||||||| ||| |||||||||||||| |   | |||||||||||||||||||| ||    
T  10493134 taccaaagacggtgttttcagggttagtggcagattgattcttagcagcatcaccgatcaacctttgatcattgttgaaagcaacaaaagaaggtgtagt 10493035  T
Q  121 tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccac 216  Q
    | | || ||||| ||||||| |||||| || ||||| | ||| |  || ||||| |||||||||||||| || || ||||||||||||||||||||    
T  10493034 tctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccatacagcaacacatgagtaggttgttccaagatctattcccac 10492939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 27829478 - 27829264
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    ||||||||| |||||||| || |||||  |||| ||| ||||||||||||| |||||||||||| || | ||| || ||||||||| |||||||||||||    
T  27829478 taccaaagatagtgttttgagggttggaagcagcttggttcttagcagcatcaccaatcaacctctgtttgtccgtgaaagcaacacaagaaggtgttgt 27829379  T
Q  121 tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca 220  Q
     ||||||||||||||||||| ||||||||||||||||||||| |  ||| ||||| | ||||| || || || || || || || || |||||||||| |    
T  27829378 cttgttgccttgttcattgtgaataatctccactctgttgtgttgatcctgccacgctgcaacgcacgagtacgttgtacctaggtcaattcccacagaa 27829279  T
Q  221 cgtccttcatacttt 235  Q
     | ||||||||||||    
T  27829278 agcccttcatacttt 27829264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 8630197 - 8630401
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    ||||||||||||||||||  | |||| ||||||  |||| ||||||||||  ||||| |||||||||||| || ||||||||||| || ||||||||  |    
T  8630197 taccaaagacagtgttttgtgggttgatggcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaacgaaggaaggtgtgat 8630296  T
Q  121 tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca 220  Q
    ||| |||||||  ||||||| ||||||||| |||||||| |  |  |||| ||| ||| ||||||| ||||| || |||||||| |||||||||||||||    
T  8630297 tttattgccttcatcattgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaaggtctattcccacagca 8630396  T
Q  221 cgtcc 225  Q
     ||||    
T  8630397 tgtcc 8630401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 220
Target Start/End: Complemental strand, 8584685 - 8584470
Alignment:
Q  5 aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa 104  Q
    |||||| ||||| || |||||||||||||||| || | |||| | ||||  |||| ||||||||||  ||||| |||||||||||| || ||||||||||    
T  8584685 aatagagatagaaatataccaaagacagtgttctctgggttgatagcagcctgatccttagcagcaccaccaaccaacctttgatcatcggtaaaagcaa 8584586  T
Q  105 caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag 204  Q
    |||| ||||||||  |||| |||||||  || |||| ||||||||| |||||||| |  |  |||| ||| ||| ||||||| ||||| || ||||||||    
T  8584585 caaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaacaccaacacaagaataggttgttccaag 8584486  T
Q  205 atctattcccacagca 220  Q
     |||||||||||||||    
T  8584485 gtctattcccacagca 8584470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 17269068 - 17269261
Alignment:
Q  20 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg 119  Q
    ||||||||||| |||||||| | |||  |||||| |||||||||||| | || ||| || ||||||| ||| | || ||||||||||||||| || || |    
T  17269068 ttaccaaagacggtgttttctgggttcatggcagcttgattcttagcggaatcaccgataaacctttcatctttagcaaaagcaacaaaagacggagtag 17269167  T
Q  120 ttttgttgccttgttcattgtaaataatctccactctgttgtgattctcca-gccacacagcaacacatgaataagtagttccaagatctattcc 213  Q
    ||||||||||||| |||||||  |||||||| |||||   ||| |||| || ||||||||||||||||||| || || || ||||| ||||||||    
T  17269168 ttttgttgccttgatcattgtgtataatctcaactctaccgtg-ttcttcatgccacacagcaacacatgagtatgtcgtcccaaggtctattcc 17269261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 8610662 - 8610843
Alignment:
Q  50 gcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatct 149  Q
    |||| |||||| |||||||||| ||| ||||||||||||||  |||  ||||||||||||||||| || ||| |||| ||||| ||||| |  || ||||    
T  8610662 gcagcttgatttttagcagcatcacctatcaacctttgatcaccagagaaagcaacaaaagaaggagtggttctgtttccttgctcattatggattatct 8610761  T
Q  150 ccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcata 231  Q
    |  |||||||||  |  ||| |||| ||||||||||||||||| || ||||||||||| ||||| | |||| |||| |||||    
T  8610762 cagctctgttgttttgttcctgccatacagcaacacatgaataggttgttccaagatcaattccaatagcaggtccctcata 8610843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 8602738 - 8602886
Alignment:
Q  56 tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactc 155  Q
    ||||| || ||||||| ||| |||||||||| ||| ||||||||||||||||||||||| || ||| |||| ||||| ||||||| |||||||||  | |    
T  8602738 tgatttttggcagcatcaccgatcaaccttttatcatcagtaaaagcaacaaaagaaggagtagttctgtttccttgatcattgtgaataatctctgccc 8602837  T
Q  156 tgttgtgattctccagccacacagcaacacatgaataagtagttccaag 204  Q
    ||||||  |  ||| |||| ||||| ||||||||||| || ||||||||    
T  8602838 tgttgttttggtcctgccaaacagctacacatgaataggttgttccaag 8602886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 17261360 - 17261496
Alignment:
Q  20 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg 119  Q
    ||||||||||| |||||||| | |||  |||||| |||||||||||| |||| ||| |||||||||| ||| | || |||||||||||||||||| ||      
T  17261360 ttaccaaagacggtgttttctgggtttatggcagcttgattcttagcggcatcaccgatcaacctttcatctttagcaaaagcaacaaaagaaggagtaa 17261459  T
Q  120 ttttgttgccttgttcattgtaaataatctccactct 156  Q
    ||||||| ||||| ||||||| ||| ||||| |||||    
T  17261460 ttttgtttccttgatcattgtgaatgatctcaactct 17261496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 8591411 - 8591496
Alignment:
Q  65 gcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctc 150  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||||||||  || | || ||||| ||||||| |||||||||    
T  8591411 gcagcatcaccaatcaacctttgatcattagtaaaagcaacaaaagaaggtgtaattctatttccttgatcattgtgaataatctc 8591496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 8582661 - 8582751
Alignment:
Q  50 gcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgt 140  Q
    |||| |||||| || ||||||| ||||||||| ||||||   | ||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  8582661 gcagcttgatttttggcagcatcaccaatcaatctttgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgt 8582751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 8635588 - 8635513
Alignment:
Q  65 gcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgt 140  Q
    ||||||| |||||||||||||||  ||||||| ||||||||| ||||||||||  || |||| ||||| |||||||    
T  8635588 gcagcatcaccaatcaacctttgtgcgtcagtgaaagcaacacaagaaggtgtgattctgttcccttgctcattgt 8635513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 8546721 - 8546776
Alignment:
Q  98 aaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccac 153  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||| ||| || |||||    
T  8546721 aaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaatgatttccac 8546776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 231
Target Start/End: Complemental strand, 29581263 - 29581088
Alignment:
Q  56 tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactc 155  Q
    ||||| ||||||||||||| |||||||||  |   |||||| ||||| |||| ||||||||| |||   |||||||| |||||||  || |||||  |||    
T  29581263 tgatttttagcagcattactaatcaacctcagtgagtcagtgaaagctacaacagaaggtgtggttccattgccttgatcattgtggatgatctcagctc 29581164  T
Q  156 tgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcata 231  Q
     ||||  ||||||| |||| || || ||||||||||| || || || || || ||||| | |||| ||||||||||    
T  29581163 ggttgatattctcctgccaaactgctacacatgaataggttgtgccgaggtcgattccgatagcaggtccttcata 29581088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 8104069 - 8104151
Alignment:
Q  56 tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcatt 138  Q
    |||||||||||||||| ||| |||||||||| |   ||||| ||||||||| |||| ||||| ||| |||| ||||| |||||    
T  8104069 tgattcttagcagcatcaccgatcaacctttcactatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcatt 8104151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 29577087 - 29577003
Alignment:
Q  56 tgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgt 140  Q
    ||||| ||||||||||||||||| |||||| |    ||||| ||||| |||| ||||||||| ||| | |||||||| |||||||    
T  29577087 tgatttttagcagcattaccaattaaccttagtgaatcagtgaaagctacaacagaaggtgtggttctattgccttgatcattgt 29577003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 9323213 - 9322990
Alignment:
Q  5 aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa 104  Q
    |||||||||||| |||||||||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||| || |   | |||||||    
T  9323213 aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaa 9323114  T
Q  105 caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag 204  Q
    |||||||||||||||||  ||| ||||| ||||||| ||||||||| ||||| | ||| |  || ||||||||||||||||| ||||| || ||||||||    
T  9323113 caaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9323014  T
Q  205 atctattcccacagcacgtccttc 228  Q
    |||||| ||||| |||||||||||    
T  9323013 atctatacccactgcacgtccttc 9322990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 9377692 - 9377469
Alignment:
Q  5 aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa 104  Q
    |||||||||||| |||||||||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||||||||| || |   | |||||||    
T  9377692 aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcaccaatcaacctttgctcattgttgaaagcaa 9377593  T
Q  105 caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag 204  Q
    |||||||||||||||||  ||| ||||| ||||||| ||||||||| ||||| | ||| |  || ||||||||||||||||| ||||| || ||||||||    
T  9377592 caaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9377493  T
Q  205 atctattcccacagcacgtccttc 228  Q
    |||||| ||||| |||||||||||    
T  9377492 atctatacccactgcacgtccttc 9377469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 9335184 - 9334962
Alignment:
Q  5 aatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaa 104  Q
    |||||||||||| |||||||||||| ||||||||||| ||| || |||||||||||||||||||||| |||| |||||||||| || |   | |||||||    
T  9335184 aatagaaatagaaatttaccaaagatagtgttttcagggttagtagcagattgattcttagcagcatcacca-tcaacctttgctcattgttgaaagcaa 9335086  T
Q  105 caaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaag 204  Q
    |||||||||||||||||  ||| ||||| ||||||| ||||||||| ||||| | ||| |  || ||||||||||||||||| ||||| || ||||||||    
T  9335085 caaaagaaggtgttgttcggtttccttgatcattgtgaataatctcaactctttggtgttgatcaagccacacagcaacacaagaataggttgttccaag 9334986  T
Q  205 atctattcccacagcacgtccttc 228  Q
    |||||| ||||| |||||||||||    
T  9334985 atctatacccactgcacgtccttc 9334962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 30776067 - 30776294
Alignment:
Q  2 gagaatagaaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaag 101  Q
    |||||||| |||||| ||||||||||||||||||||| || |||| | ||||  || | ||||||||||  ||| | |||||||||| | ||||| ||||    
T  30776067 gagaatagcaatagaaatttaccaaagacagtgttttgagggttgatagcagcctggtccttagcagcagcaccgaccaacctttgaccatcagtgaaag 30776166  T
Q  102 caacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttcc 201  Q
    ||||||||||||||||  ||||| ||||||  || ||||  ||||| || |||||||| |  | ||||||||| ||||| ||||| || || || |||||    
T  30776167 caacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacgttgttcc 30776266  T
Q  202 aagatctattcccacagcacgtccttca 229  Q
    ||| ||||| ||||| ||| ||||||||    
T  30776267 aaggtctatccccacggcatgtccttca 30776294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 35133422 - 35133624
Alignment:
Q  20 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg 119  Q
    |||||||| |||||||||||| | ||||  |||| ||||||||||||||||| ||| |||||||||||||| | ||| ||||||| | ||||||||||||    
T  35133422 ttaccaaatacagtgttttcaaaattggcagcagcttgattcttagcagcatcaccgatcaacctttgatccttagtgaaagcaatacaagaaggtgttg 35133521  T
Q  120 ttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagc 219  Q
    ||||||||| ||| || |||| ||| || || ||||  | ||| |  ||  |||| || |||||||||||||| || ||||| || |||||||| | |||    
T  35133522 ttttgttgctttgatcgttgtgaatgatttcgactcgatagtgttgttcttgccatactgcaacacatgaatacgttgttccgaggtctattccgatagc 35133621  T
Q  220 acg 222  Q
    |||    
T  35133622 acg 35133624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 42554320 - 42554110
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    ||||||||||||||||||  | ||||||||| | ||||| ||||||||||| |||||||||||||| ||  | |||||||||||||||||||||||||||    
T  42554320 taccaaagacagtgttttgggggttggtggcggtttgatccttagcagcatcaccaatcaacctttcatgatgagtaaaagcaacaaaagaaggtgttgt 42554221  T
Q  121 tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca 220  Q
    |||||||||||| ||||||| ||||||||| ||||| || || |  ||   |||||||| |||||| ||||| || |||||||| ||||||||||| |||    
T  42554220 tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttgttccaaggtctattcccactgca 42554121  T
Q  221 cgtccttcata 231  Q
    |||||||||||    
T  42554120 cgtccttcata 42554110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 28220906 - 28221122
Alignment:
Q  11 aatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaag 110  Q
    |||||| ||||||||||||| || ||||  | |||| |||| | |||||| ||||||||||  ||||||||||||| ||| || || |||||||||||||    
T  28220906 aatagaaatttaccaaagacggtattttgggggttgttggccgtttgatttttagcagcatcgccaatcaacctttcatcatcggtgaaagcaacaaaag 28221005  T
Q  111 aaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctat 210  Q
    |||| ||||||||||||||||| ||||||| ||||||||| || || ||||| |  ||  |||||||||||||||||||||| || ||||||||||||||    
T  28221006 aaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacacagcaacacatgaatacgttgttccaagatctat 28221105  T
Q  211 tcccacagcacgtcctt 227  Q
    ||||||||||| |||||    
T  28221106 tcccacagcacatcctt 28221122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 16656699 - 16656524
Alignment:
Q  55 ttgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccact 154  Q
    ||||||||||||||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||| |||| || || |||||||  || |||||  ||    
T  16656699 ttgattcttagcagcatcaccgatcaacctttgatcatgagtgaaagcaacaaaagaaggtgttgttctgtttccctggtcattgtgtatgatctctgct 16656600  T
Q  155 ctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagcacgtccttcat 230  Q
    |||||||||   |||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  16656599 ctgttgtgacggtccatccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttcat 16656524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 12244540 - 12244329
Alignment:
Q  17 tatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtg 116  Q
    |||||||||||||||||||||| |||||| |  |||| |||||| |||||||||| |||||| ||||||||||| ||||| ||||||||| |||||||||    
T  12244540 tatttaccaaagacagtgttttgagagttagcagcagcttgatttttagcagcatcaccaataaacctttgatcttcagtgaaagcaacacaagaaggtg 12244441  T
Q  117 ttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccac 216  Q
    ||||| ||||||| || || |||| ||| || || || |    ||| |  ||| |||| || |||||||||||||| || || ||||| |||||||||||    
T  12244440 ttgttctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactgcaacacatgaatacgttgtaccaaggtctattcccac 12244341  T
Q  217 agcacgtccttc 228  Q
     |||||||||||    
T  12244340 ggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 43626286 - 43626485
Alignment:
Q  18 atttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgt 117  Q
    |||||||||||||||||||||| | || || || || ||||  ||||||||||| ||||||||||||||| || | ||| |||| |||||||||||||||    
T  43626286 atttaccaaagacagtgttttcggggtcggaggtagcttgacccttagcagcatcaccaatcaacctttggtccttagtgaaagaaacaaaagaaggtgt 43626385  T
Q  118 tgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccaca 217  Q
     ||| |||| ||||| |||||||  |||||||| |||||  |||  |  || ||||||||||||| ||| ||||| || |||||||| ||||||||||||    
T  43626386 agttctgtttccttggtcattgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatacgttgttccaaggtctattcccaca 43626485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 12258047 - 12257918
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    ||||||||||||||| || || |||||  |||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||| |||||    
T  12258047 taccaaagacagtgtgttgagggttggcagcagcttgattcttagcagcatcaccaatcaacctttgatctttagtaaaagcaacacaagaaggcgttgt 12257948  T
Q  121 tttgttgccttgttcattgtaaataatctc 150  Q
    | |||| ||||| || |||| ||| |||||    
T  12257947 tctgtttccttgatcgttgtgaatgatctc 12257918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 228
Target Start/End: Original strand, 12235766 - 12235974
Alignment:
Q  20 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg 119  Q
    ||||||||||| |||||||  | |||||  |||| ||||||||||||||||| |||||||||||| ||||  || || ||||||||||||||||| ||||    
T  12235766 ttaccaaagacggtgttttgcgggttggaagcagcttgattcttagcagcatcaccaatcaacctctgattttcggtgaaagcaacaaaagaaggggttg 12235865  T
Q  120 ttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagc 219  Q
    || | |||||||| || |||| ||| ||||| ||||    ||| |  ||| |||| || |||||||||||||| || || ||||| ||||| ||||||||    
T  12235866 ttctattgccttgatcgttgtgaatgatctcaactcgagagtgctgttcctgccatactgcaacacatgaatatgttgtaccaaggtctatccccacagc 12235965  T
Q  220 acgtccttc 228  Q
    | |||||||    
T  12235966 aagtccttc 12235974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 228
Target Start/End: Original strand, 14705432 - 14705639
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    |||||||||||||||||  || |||||  |||| ||||||||||||||||| |||||||||||  ||||  || || ||||||||||||||||| |||||    
T  14705432 taccaaagacagtgtttcgagggttggcagcagcttgattcttagcagcatcaccaatcaaccgctgattttcggtgaaagcaacaaaagaaggagttgt 14705531  T
Q  121 tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccacagca 220  Q
    | | |||||||| || |||| ||| || || ||||  |  || |  ||| |||| || ||||||||||| || || || ||||| |||||||||||||||    
T  14705532 tctattgccttgatcgttgtgaatgatttcaactcgataatgttgttcctgccatactgcaacacatgagtacgttgtaccaaggtctattcccacagca 14705631  T
Q  221 cgtccttc 228  Q
    | ||||||    
T  14705632 catccttc 14705639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 16661209 - 16661003
Alignment:
Q  11 aatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaag 110  Q
    |||||| || || ||||||| |||||||  | |||| | |||| ||||| ||||||||||  ||| | |||||||||| | |||||||||||||||||||    
T  16661209 aatagaaatatagcaaagacggtgttttgtgggttgatagcagcttgatccttagcagcaccaccgaccaacctttgagcatcagtaaaagcaacaaaag 16661110  T
Q  111 aaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctat 210  Q
    |||||||  ||||||||||||  || ||||  |||||||| |||||||| |  |  |||| ||| |||||||||||||| || || ||||| || |||||    
T  16661109 aaggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttctcttccaaccaaacagcaacacatgagtatgttgttcctaggtctat 16661010  T
Q  211 tcccaca 217  Q
     ||||||    
T  16661009 gcccaca 16661003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 7543245 - 7543357
Alignment:
Q  20 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg 119  Q
    ||||||||||||||||||| || |||||  |||| |||||||||||||  || ||| |||||||| ||||  || || ||||||||||||||||||||||    
T  7543245 ttaccaaagacagtgttttgagggttggaagcagcttgattcttagcattatcaccgatcaacctctgattttcggtgaaagcaacaaaagaaggtgttg 7543344  T
Q  120 ttttgttgccttg 132  Q
    || ||||||||||    
T  7543345 ttctgttgccttg 7543357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 12000301 - 12000413
Alignment:
Q  20 ttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttg 119  Q
    |||||||| |||||||||| ||||||||  || | ||| || |||||||||| |||||  ||||||||||  ||||| ||||||||| |||||||||||     
T  12000301 ttaccaaaaacagtgttttgagagttggcagcggcttggtttttagcagcatcaccaacaaacctttgattttcagtgaaagcaacacaagaaggtgtta 12000400  T
Q  120 ttttgttgccttg 132  Q
    |||||||||||||    
T  12000401 ttttgttgccttg 12000413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 43745793 - 43745985
Alignment:
Q  21 taccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgt 120  Q
    |||||||||  ||||||| || ||||||||| | ||||||||||||||| | ||| |||||||||| ||  |||||||||||||||||||||   |||||    
T  43745793 taccaaagatggtgttttgagggttggtggcggtttgattcttagcagcgtcacctatcaacctttcatgatcagtaaaagcaacaaaagaa---gttgt 43745889  T
Q  121 tttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacacagcaacacatgaataagtagttccaagatctattcccac 216  Q
    |||||||||||| ||||||| ||||||||| ||||| || || |  ||  |||||||||||||||| ||||| || |||||||| |||||||||||    
T  43745890 tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaatacgttgttccaaggtctattcccac 43745985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 12529871 - 12529969
Alignment:
Q  55 ttgattcttagcagcattaccaatcaacctttgatcgtcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccac 153  Q
    |||||| || ||||||| ||||||||| || |||   | ||||||||||||| ||||||||||||||||||| ||||| ||||||| ||| || |||||    
T  12529871 ttgatttttggcagcatgaccaatcaatctctgagaattagtaaaagcaacacaagaaggtgttgttttgtttccttgatcattgtgaattatttccac 12529969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 28911272 - 28911352
Alignment:
Q  10 aaatagatatttaccaaagacagtgttttcagagttggtggcagattgattcttagcagcattaccaatcaacctttgatc 90  Q
    ||||||| || |||| || ||||||||||| | |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  28911272 aaatagaaatatacctaaaacagtgttttcggggttggtggcagcctgattcttagcagcatcaccaatcaacctttgatc 28911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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