View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_191 (Length: 274)
Name: NF1498_high_191
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_191 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 23114120 - 23113882
Alignment:
| Q |
25 |
acgatgtgacagtgacacacacaggttttccaaatcataaagaagcttgttggggggttaagaagtttgttaggggttgaggtatcgatgtgttgagtct |
124 |
Q |
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| T |
23114120 |
acgatgtgacagtgacacacat--gttttccaaaacataaagaagcttgttggggggttaagaagtttgttaggggttgaggtattgatatgttgagtct |
23114023 |
T |
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| Q |
125 |
tgctaacatatttccatgcccaaactccttataattgagttctctggcttgaactttcccgtctgcaaaactcctccaaaattctcaaaccc------tc |
218 |
Q |
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| T |
23114022 |
tgctaacatatttccatgcccaaactccttataaatgagttctctggcttgaactttcccgtatgcaaaactcctccaaaattctcaaaccctcatactc |
23113923 |
T |
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| Q |
219 |
atgtgattttactttaccttattctctcaaatggagttcct |
259 |
Q |
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| T |
23113922 |
atatgattttacattacctaatcctctcaaatggagttcct |
23113882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 23078802 - 23078747
Alignment:
| Q |
204 |
aattctcaaaccctcatgtgattttactttaccttattctctcaaatggagttcct |
259 |
Q |
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| T |
23078802 |
aattctcaaaccctctagtgattttactttaccaaataatctcaaatggagttcct |
23078747 |
T |
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