View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_192 (Length: 274)
Name: NF1498_high_192
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_192 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 47712430 - 47712173
Alignment:
| Q |
17 |
agaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtg |
116 |
Q |
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| T |
47712430 |
agaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtg |
47712331 |
T |
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| Q |
117 |
tggcattgggattgttggtgtctgaattgtgtgaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcatgtgattcaggggga |
216 |
Q |
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| T |
47712330 |
tggcattgggattgttggtgtctgaattgtgtgaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcatgtgattcaggggga |
47712231 |
T |
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| Q |
217 |
tgatctgaagtccaagacagagtttgtgagggagatggattgggggatgaacactgat |
274 |
Q |
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| T |
47712230 |
tgatctgaagtccaagacagagtttgtgatggagatggattgggggatgaacactgat |
47712173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 19795531 - 19795274
Alignment:
| Q |
17 |
agaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtg |
116 |
Q |
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| T |
19795531 |
agaattgttgatgatttgctcaagaagggaaaaatgaggaattgtcttgctgtgtgtgatgtgtctgggagtatgcatgggacccctatggaggtgtgtg |
19795432 |
T |
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| Q |
117 |
tggcattgggattgttggtgtctgaattgtgtgaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcatgtgattcaggggga |
216 |
Q |
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| T |
19795431 |
tggcattggggttgttggtgtctgaattgaacgaggaaccatggaaagggaaggttattactttcagcagggagcctcagcttcatgtgattaaggggga |
19795332 |
T |
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| Q |
217 |
tgatctgaagtccaagacagagtttgtgagggagatggattgggggatgaacactgat |
274 |
Q |
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| T |
19795331 |
taatctcaagtccaagacacagtttgtgaggaacatggattgggggatgaacactgat |
19795274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 19786056 - 19786313
Alignment:
| Q |
17 |
agaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtg |
116 |
Q |
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| T |
19786056 |
agaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtgtgatgtttctgggagcatgtctgggactcctatggaggtgtctt |
19786155 |
T |
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| Q |
117 |
tggcattgggattgttggtgtctgaattgtgtgaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcatgtgattcaggggga |
216 |
Q |
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| T |
19786156 |
tggcattggggttgttggtgtctgaattgagtgatgagccttggaaagggaaagttattactttcagcgaggagcctcagcttcatgtaattaaggggga |
19786255 |
T |
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| Q |
217 |
tgatctgaagtccaagacagagtttgtgagggagatggattgggggatgaacactgat |
274 |
Q |
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| T |
19786256 |
taatctcaagtccaagacacagtttgtgagggatatggattgggggatgaacactgat |
19786313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 15834838 - 15834581
Alignment:
| Q |
17 |
agaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtg |
116 |
Q |
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| T |
15834838 |
agaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtctgatgtgtctgcgagtatgtatgggacccctatggaggtgtctg |
15834739 |
T |
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| Q |
117 |
tggcattgggattgttggtgtctgaattgtgtgaggaaccttggaaagggaaggtgattactttcagtgctgagcctcagcttcatgtgattcaggggga |
216 |
Q |
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| T |
15834738 |
tggcattggggttgttggtgtctgaattgagcgaggaaccatggaaagggaaggtgattagtttcagtgctgagcctgagcttcatgtgattaaggggga |
15834639 |
T |
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| Q |
217 |
tgatctgaagtccaagacagagtttgtgagggagatggattgggggatgaacactgat |
274 |
Q |
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|||||||||||||||| || ||||||||| | |||||||||||| | ||||||||| |
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| T |
15834638 |
tgatctgaagtccaaggcaaggtttgtgagatacatggattgggggttcaacactgat |
15834581 |
T |
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