View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_195 (Length: 271)
Name: NF1498_high_195
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_195 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 39170166 - 39170415
Alignment:
| Q |
1 |
gcatatgtgattgttcattctaataggtagtgcttaccaaacctttcataattctggtgacctttttagagtccaactcacttaaatttccttattccaa |
100 |
Q |
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| T |
39170166 |
gcatatgtgattgttcattctaataggtagtgcttaccaaacctttcataattttggtgacctttttagagttcaactcacttaaatttccttattccaa |
39170265 |
T |
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| Q |
101 |
aattatatgactcatcttaaaaaatagaaaatacaatacttagctaagacaatcacatcttaaactagtcatcaagttttttactctcccactttctatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39170266 |
aattatatgactcatcttaaaaaatagaaaatacgatacttagctaagacaatcacatcttaaactagtcatcaagttttttactctcccactttctatt |
39170365 |
T |
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| Q |
201 |
actcaattcgtttttcatcaaatagcagtgattttgtttggggaaagaaataatag |
256 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
39170366 |
actcaattcgtttttcatcaaatggcag------tgtttggggaaagaaataatag |
39170415 |
T |
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