View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_196 (Length: 271)
Name: NF1498_high_196
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_196 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 7003387 - 7003145
Alignment:
| Q |
18 |
atacaaatataaaaaggacacaaatgaaatgttatagattgttatctcacaaaacaaatgtgattagctatgttgcacaatcaaaagttttaaggtacaa |
117 |
Q |
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| T |
7003387 |
atacaaatataaaaaggatacaaatgaaatgttatagattgttatgtcacaaaacaaatgtgattagctatgttgcgcaatcaaaagttttaaggtacaa |
7003288 |
T |
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| Q |
118 |
atacgtctatatcgaattttaatagaatttaatatcataaaatttcaaatttatctaaaatacaaaaacacatatcagaaataacacaaaaggagtcaaa |
217 |
Q |
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| T |
7003287 |
atacgtctatatcgaattttaatagaatttaatatcataaaatttcaaatttatctaaaatacaaaaacacatatcagaaataacacaaaaggagtcaaa |
7003188 |
T |
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| Q |
218 |
tttattaagtttggtgattgctacaagattgagttaagcctatg |
261 |
Q |
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| T |
7003187 |
tttattaagctt-gtgattgctacaagattgagttaagcctatg |
7003145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 213
Target Start/End: Complemental strand, 7012521 - 7012376
Alignment:
| Q |
75 |
atgtgattagctatgttgcacaatcaaaa-gttttaaggtacaaatacgtctatatcgaattttaatagaattt--aat-atcataaaatt-tcaaattt |
169 |
Q |
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||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||| |||| ||| | |||||| ||| || |||||||| |||||| |
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| T |
7012521 |
atgtgattagctatgctgcataatcaaaaagttttaaggtacaagtacgtctatatagaatcttagttgaatttgaaataataataaaattgaaaaattt |
7012422 |
T |
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| Q |
170 |
atctaaaatacaaaaacac--atatcagaaataacacaaaaggagt |
213 |
Q |
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| T |
7012421 |
acctaaaatataaaaacacaaatatcagaaatgacacaaaaggagt |
7012376 |
T |
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