View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_197 (Length: 271)
Name: NF1498_high_197
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_197 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 25 - 255
Target Start/End: Complemental strand, 26518069 - 26517844
Alignment:
| Q |
25 |
taaatggtgtccaaatgattgtgatcacccaagtattttcctaaaaatgagtaataaatatgacacatgccatgaagctatagctagacaactcaatata |
124 |
Q |
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| T |
26518069 |
taaatggtgtccaaatgattgtgatcacccaagtattttcctaaaaatgagtaataaatatgacacatgccatgaagctatagtgagacaactcaatata |
26517970 |
T |
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| Q |
125 |
ttcaaataaactagcagaaacaaaatacccatcccaaaaggtaagatatactctctttcgagttttctcatgaagaaattaaagggccaaaaggacattt |
224 |
Q |
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| T |
26517969 |
ttcaaataaactagcagaaacaaaatacccatcccaaaaggtaagatatactctcttttgagttttctcatgaag-----aaagggccaaaaggacattt |
26517875 |
T |
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| Q |
225 |
gctaagatagaaagtcatatgactaatatgt |
255 |
Q |
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| T |
26517874 |
gctaagatagaaagtcatatgactaatatgt |
26517844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 30374935 - 30375028
Alignment:
| Q |
94 |
ccatgaagctatagctagacaactcaatatattcaaataaactagcagaaacaaaatacccatcccaaaag----gtaagatatactctctttc |
183 |
Q |
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| T |
30374935 |
ccatgaagctatagtgatagaactcaacatattcaaataaacaagcagaaacaaaatgcccatcccaaaaggtaagtaagatatactctctttc |
30375028 |
T |
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