View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1498_high_2 (Length: 852)
Name: NF1498_high_2
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_2 |
 | |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 681
Target Start/End: Original strand, 16696763 - 16697443
Alignment:
| Q |
1 |
tagcaccaaactaatagttactaagaaagataaacatatatacttttaaagcctaaatcatgtataagaattagcttcattagaaaatacaaaaaagcaa |
100 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16696763 |
tagcaccaaaactatagttactaagaaagataaacatatatacttgtaaagcctaaatcatgtataagaattagcttcattagaaaatacaaaaaagtaa |
16696862 |
T |
|
| Q |
101 |
attataaattattttatcaacccacttgtgttggtcggatgatgttggcttcggactaacactcaaaggcactgataatgtccggtgtaaactcttttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16696863 |
attataaattattttatcaacccacttgtgttggtcggatgatgttggcttcagaccaacactcaaaggcactgataatgcccggtgtaaactcttttaa |
16696962 |
T |
|
| Q |
201 |
aatatgtctcaaaaaatggtgaaccattgcaaaagtgtaagatagtaaacatgtgaatggacaaaatagggaaggataagaagaaaaatagctttgtgtg |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16696963 |
aatatgtctcaaaaattggtgaaccattgcaaaactttaagatagtaaacatgtgaatggacaaaatagggaaggataagaagaaaaatagctttgtgtg |
16697062 |
T |
|
| Q |
301 |
taccttgaagcaatgtggaagacatgctctaaatgtgtgtatcatttcatgtgtataaaattttagggttggaggttgttaataagaaaaccactcatct |
400 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16697063 |
taccttgaagcaatatggaagacatgctctaaacgtgtgtatcatttcatgtgtataaaattttagggttggaggttgttaataagaaaaccactcatct |
16697162 |
T |
|
| Q |
401 |
tcttcacgggtaacaaagacaaccaaggatgttctaaaatccaacaaagaggacnnnnnnntatttaaacaaatgggaagttaattttggataatttatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16697163 |
tcttcacgggtaacaaagacaaccaaggatgttctaaaatccaacaaagagtacaaaaaaatatttaaacaaatgggaagttaattttggataatttatt |
16697262 |
T |
|
| Q |
501 |
ggagaaattgaaagagagcatagaaagttgttaagcacaatagttatgtaaaatatgaaactatccatcatataaaatcaatattcctgacatcatacac |
600 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16697263 |
ggagaaattgaaagagagcatagcaagtggttaagcacaatagttatgtaaaatatgagactatccatcatataaaatcaatattcctgacatcatacac |
16697362 |
T |
|
| Q |
601 |
aacctatctttatgcattttatcatcaacagatagggaaatgggattattctcccatagattttatcaatacgaaggagct |
681 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
16697363 |
aacctatctttatgcattttatcaccaacagatagagaaatgggattattctcccatagattttatcaatacaaaggagct |
16697443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 37257493 - 37256887
Alignment:
| Q |
1 |
tagcaccaaactaatagttactaagaaagataaacatatatacttttaaagcctaaatcatgtataagaattagcttcattagaaaatacaaaaaagcaa |
100 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37257493 |
tagcaccaaaacaatagttactaaacaagataaacatatatacatttaaagcctaaatcatgtataagaattagcttcattagaaaacacaaaaaagcaa |
37257394 |
T |
|
| Q |
101 |
attataaattattttatcaacccacttgtgttggtcggatgatgttggcttcggactaacactcaaaggcactgataatgtccggtgtaaactcttttaa |
200 |
Q |
| |
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|||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
37257393 |
attataaattattttatcaacccatttatgttagtcggatgatgttggctttggactaatactcaaaggcaccgataatgtccggtgtaaactcttttaa |
37257294 |
T |
|
| Q |
201 |
aatatgtctcaaaaaatggtgaaccattgcaaaagtgtaagatagtaaacatgtgaatggacaaaatagggaaggataagaagaaaaatagctttgtgtg |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37257293 |
aatatgtctcaaaaattggtgaaccattgcaaaagtgtaagatagcaaacatgtgaatggacaaaatagggaaggataagaagaaaaatagctttgtgtg |
37257194 |
T |
|
| Q |
301 |
taccttgaagcaatgtggaagacatgctctaaatgtgtgtatcatttcatgtgtataaaattttagggttggaggttgttaataagaaaaccactcatct |
400 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
37257193 |
tacgtt--------------gacatgctctaaatgtgtgtatcatttcatctctataaaattttagggttggaggttgttaataagaaaaccactaatgt |
37257108 |
T |
|
| Q |
401 |
tcttcacgggtaacaaagacaacc-aaggatgttctaaaatccaacaaagagga-cnnnnnnntatttaaacaaatgggaagttaattttggataattta |
498 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
37257107 |
tcttcacgggtaacaaagacaaccaaaggatgttctaaaatcccacaaagaagataaaaaaaatatttaaacaaatgggaagttaattttggataattta |
37257008 |
T |
|
| Q |
499 |
ttggagaaattgaaagagagcatagaaagttgttaagcacaatagttatgtaaaatatgaaactatccatcatataaaatcaatattcctgacatcatac |
598 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37257007 |
ttggagaaattggaagagagcatagcaagtggttaagcgcaatagttatgtaaaatatgagactatccatcatataaaatcaatattcctgacatcatac |
37256908 |
T |
|
| Q |
599 |
acaacctatctttatgcattt |
619 |
Q |
| |
|
||||||||||||||| ||||| |
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| T |
37256907 |
acaacctatctttatccattt |
37256887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 683 - 834
Target Start/End: Complemental strand, 21238774 - 21238624
Alignment:
| Q |
683 |
ctaaaatcattgaggtcctgtggcagccaccaatatttcattggataaaatgcaacaccgacggatctgctaatgatattacctcctcttgtggtggcat |
782 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
21238774 |
ctaaaatcattgaggtcctgtggcagccaccaatatttcattggataaaatgcaacaccgacggatctgctaataatattacttcctcttgtggtggcat |
21238675 |
T |
|
| Q |
783 |
attcagagataaagactcaaaattcatcttatgctttgctgagaatacaggt |
834 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21238674 |
attaagagat-aagactcaaaattcatcttatgctttgctgagaatacaggt |
21238624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 683 - 834
Target Start/End: Complemental strand, 14098331 - 14098180
Alignment:
| Q |
683 |
ctaaaatcattgaggtcctgtggcagccaccaatatttcattggataaaatgcaacaccgacggatctgctaatgatattacctcctcttgtggtggcat |
782 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14098331 |
ctaaaatcattgaggtcctatggcagccaccaatatttcattggataaaatgcaacaccgacggatctgctaatgatattacctcctcttgtggtggcat |
14098232 |
T |
|
| Q |
783 |
attcagagataaagactcaaaattcatcttatgctttgctgagaatacaggt |
834 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14098231 |
attcagagataaagactcaaaattcatcttatgctttgctgagaatacaggt |
14098180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 113; Significance: 9e-57; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 722 - 834
Target Start/End: Complemental strand, 10616 - 10504
Alignment:
| Q |
722 |
attggataaaatgcaacaccgacggatctgctaatgatattacctcctcttgtggtggcatattcagagataaagactcaaaattcatcttatgctttgc |
821 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10616 |
attggataaaatgcaacaccgacggatctgctaatgatattacctcctcttgtggtggcatattcagagataaagactcaaaattcatcttatgctttgc |
10517 |
T |
|
| Q |
822 |
tgagaatacaggt |
834 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10516 |
tgagaatacaggt |
10504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 554 - 619
Target Start/End: Original strand, 19766 - 19831
Alignment:
| Q |
554 |
tatgaaactatccatcatataaaatcaatattcctgacatcatacacaacctatctttatgcattt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19766 |
tatgaaactatccatcatataaaatcaatattcctgacatcatacacaacctatctttatgcattt |
19831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 554 - 619
Target Start/End: Complemental strand, 32945 - 32880
Alignment:
| Q |
554 |
tatgaaactatccatcatataaaatcaatattcctgacatcatacacaacctatctttatgcattt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32945 |
tatgaaactatccatcatataaaatcaatattcctgacatcatacacaacctatctttatgcattt |
32880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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