View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_20 (Length: 594)
Name: NF1498_high_20
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 332 - 572
Target Start/End: Complemental strand, 27494380 - 27494143
Alignment:
| Q |
332 |
tttttcaagccaccttttaaattataatatctttgctaaaccaagtttgaaacttaatgcatatccctttctttcagtgacaaaccaaaatataaaccga |
431 |
Q |
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| T |
27494380 |
tttttcaagccaccttttaaattataatatctttgctaaaccaattttgaaacttaatgcatatccctttctttcagcgacaaaccaaaatataaaccga |
27494281 |
T |
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| Q |
432 |
tatagaccttcataattattttgatgttgtttatcctatataaagtcaggtagaagaattaaaaacaaaaattccgtaggcttaaaattaagttgaggat |
531 |
Q |
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| T |
27494280 |
tatagaccttcataattattttgatgttgtttatcctatataaagtcaggtagaagaattaaa---aaaaattccgtaggcttaaaattaagttgaggat |
27494184 |
T |
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| Q |
532 |
tgcttctggaattaacaacattctaagatggaggtggagta |
572 |
Q |
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| T |
27494183 |
tgcttctagaattaacaacattctaagatggaggtggagta |
27494143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 26809761 - 26809571
Alignment:
| Q |
3 |
gtataaatggcatgtccttctctatcctgaacaagtttgaagattttataccaaggtaaacatctatgctagttggccttgctaatggagcgtcaatcaa |
102 |
Q |
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| T |
26809761 |
gtataaatgttatgtccctctttaccctgaacaagtttgaaaatcttataccatggtatacatcaatgctagttggccttgccaatggagcatcaatcaa |
26809662 |
T |
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| Q |
103 |
gccttatgtgacggtggaaaatctcatcctgctggaggatagactaaaattccctattgacttcatcatcttggagatggaggatgagaag |
193 |
Q |
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| T |
26809661 |
gcctcatgggaaggtggaaaatgtcattgtgcatgtggacatattgaaattacctaatgaattcatcatcttagagatggaggatgagaag |
26809571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 441
Target Start/End: Complemental strand, 26808887 - 26808718
Alignment:
| Q |
268 |
tattctttacatgcttattggttgtacatacacatattgagacaattttttggtaactataatctttttcaagccaccttttaaattataatatctttgc |
367 |
Q |
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| T |
26808887 |
tattctttacatgcttattggttgtacatacatacattgaaacaattttatgg---gtagagcttttttcaagccaccctttgaatcatataatctttac |
26808791 |
T |
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| Q |
368 |
taaaccaagtttgaaacttaatgcatatccctttctttcagtgacaaaccaaaatataaaccgatatagacctt |
441 |
Q |
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| T |
26808790 |
taaaccaagtacgagctttcatgcatgt-cctttctttcagtgacaacccctaacataagctgatatagacctt |
26808718 |
T |
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