View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_200 (Length: 269)

Name: NF1498_high_200
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_200
NF1498_high_200
[»] chr5 (4 HSPs)
chr5 (1-178)||(13350066-13350243)
chr5 (31-123)||(13342023-13342114)
chr5 (73-129)||(18051608-18051664)
chr5 (62-122)||(20320926-20320986)
[»] chr7 (1 HSPs)
chr7 (57-128)||(8630020-8630091)
[»] chr4 (5 HSPs)
chr4 (13-123)||(5884466-5884575)
chr4 (57-123)||(7044728-7044794)
chr4 (60-123)||(27527686-27527749)
chr4 (31-128)||(18327339-18327436)
chr4 (31-128)||(18437961-18438058)
[»] chr2 (2 HSPs)
chr2 (57-130)||(31238039-31238112)
chr2 (79-123)||(20063715-20063759)
[»] chr1 (4 HSPs)
chr1 (1-123)||(16417310-16417432)
chr1 (62-123)||(9352130-9352191)
chr1 (1-123)||(18337528-18337649)
chr1 (64-132)||(39845648-39845716)
[»] chr8 (1 HSPs)
chr8 (67-123)||(26879109-26879165)
[»] scaffold0048 (1 HSPs)
scaffold0048 (57-123)||(48850-48916)
[»] chr6 (6 HSPs)
chr6 (57-123)||(5422810-5422876)
chr6 (57-123)||(17250058-17250124)
chr6 (62-123)||(10958254-10958315)
chr6 (62-123)||(26053363-26053424)
chr6 (62-123)||(26073416-26073477)
chr6 (79-123)||(11327655-11327699)
[»] scaffold0186 (1 HSPs)
scaffold0186 (57-130)||(8437-8510)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 13350066 - 13350243
Alignment:
Q  1 ttttgatgtgattttactagaattttgtctgtttttggattttgtaacagatatgggtcgatgaaggtgagtaaagttgcaaaaccttagattttgggat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  13350066 ttttgatgtgattttactagagttttgtctgtttttggattttgtaacggatatgggtcgatgaaggtgagtaaagttgcaaaatcttggattttgggat 13350165  T
Q  101 ttaagtcgtgattttgacaacaaagattgtgataggtttagcaaccattatcttttctttaccttatcatctttcaac 178  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13350166 ttaagttgtgattttgacaacaaagattgtgataggtttagcaaccattatcgtttctttaccttatcatctttcaac 13350243  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 13342023 - 13342114
Alignment:
Q  31 gtttttggattttgtaacagatatgggtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    ||||||||||| || ||  ||| ||| ||||||||||||||||||||   ||| |||  ||||||| ||||||| ||| ||||||||||||||    
T  13342023 gtttttggattctgcaatggatttggatcgatgaaggtgagtaaagtcaaaaatcctg-gattttgcgatttaaatcgcgattttgacaacaa 13342114  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 18051608 - 18051664
Alignment:
Q  73 aaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaaagattg 129  Q
    ||||| |||||| | || ||||| |||||||||||| |||||||||||||| |||||    
T  18051608 aaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaatgattg 18051664  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 20320986 - 20320926
Alignment:
Q  62 tgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaaca 122  Q
    |||||||||  |||||||||||| |||| ||||| ||||||| || | |||||||||||||    
T  20320986 tgaaggtgaagaaagttgcaaaatcttaaattttaggatttaggttgggattttgacaaca 20320926  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 8630020 - 8630091
Alignment:
Q  57 gtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaaagatt 128  Q
    |||| ||||| | ||||||||||||||| | |||||||||||| |||||||| |||||||||||||| ||||    
T  8630020 gtcgttgaagttaagtaaagttgcaaaatcctagattttgggacttaagtcgcgattttgacaacaatgatt 8630091  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 5884466 - 5884575
Alignment:
Q  13 tttactagaattttgtctgtttttggattttgtaacagatatgggtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgat 112  Q
    ||||||||||||||| || |||||  |||||| ||  ||| ||| ||||||||||||||||||| | ||||| | || ||||||| |||||||| |||||    
T  5884466 tttactagaattttgcctatttttacattttgcaatggatttggatcgatgaaggtgagtaaag-tacaaaatcctatattttggaatttaagttgtgat 5884564  T
Q  113 tttgacaacaa 123  Q
    ||| |||||||    
T  5884565 tttaacaacaa 5884575  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 7044794 - 7044728
Alignment:
Q  57 gtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||| ||||||||| ||||||||||||| | | |||||| |||||||||||| ||||||||||||||    
T  7044794 gtcgttgaaggtgaataaagttgcaaaatcatggattttaggatttaagtcgggattttgacaacaa 7044728  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 27527749 - 27527686
Alignment:
Q  60 gatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    ||||||||||||||||||||||||| | |  ||||||||||  |||| ||||||||||||||||    
T  27527749 gatgaaggtgagtaaagttgcaaaatcctgaattttgggatccaagttgtgattttgacaacaa 27527686  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 18327436 - 18327339
Alignment:
Q  31 gtttttggattttgtaacagatatgggtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaaagatt 128  Q
    ||||||||| ||||| | || | || |||| ||||| | |||||||| |||||| | || |||||| || |||| |||||||||||||||||| ||||    
T  18327436 gtttttggaatttgttatagttttgagtcgttgaagctaagtaaagtcgcaaaatcctaaattttgagacttaattcgtgattttgacaacaatgatt 18327339  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 18437961 - 18438058
Alignment:
Q  31 gtttttggattttgtaacagatatgggtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaaagatt 128  Q
    ||||||||| ||||| | || | || |||| ||||| | |||||||| |||||| | || |||||| || |||| |||||||||||||||||| ||||    
T  18437961 gtttttggaatttgttatagttttgagtcgttgaagctaagtaaagtcgcaaaatcctaaattttgagacttaattcgtgattttgacaacaatgatt 18438058  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 31238039 - 31238112
Alignment:
Q  57 gtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaaagattgt 130  Q
    |||| |||||||||  ||||| |||||| | |||||||| |||||||||||| |||||||||||||| ||||||    
T  31238039 gtcgttgaaggtgaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaatgattgt 31238112  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 20063759 - 20063715
Alignment:
Q  79 gcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||||||||| |||||| || ||||||||| ||||||||||||||    
T  20063759 gcaaaaccttggattttaggttttaagtcgggattttgacaacaa 20063715  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 16417432 - 16417310
Alignment:
Q  1 ttttgatgtgattttactagaattttgtctgtttttggattttgtaacagatatgggtcgatgaaggtgagtaaagttgcaaaaccttagattttgggat 100  Q
    |||||||| ||||||||||||| |||||||||||| |||||||| ||   || ||  | | |||| |  ||||||||||||| | | | ||| || ||||    
T  16417432 ttttgatgcgattttactagaactttgtctgttttgggattttgaaatgaatttgaatagttgaacgcaagtaaagttgcaagatcatggatattaggat 16417333  T
Q  101 ttaagtcgtgattttgacaacaa 123  Q
    |||||||| ||||||||||||||    
T  16417332 ttaagtcgcgattttgacaacaa 16417310  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 9352130 - 9352191
Alignment:
Q  62 tgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||||||||  ||||| |||||||| | |||||| |||||||||||| ||||||||||||||    
T  9352130 tgaaggtgaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaacaa 9352191  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 18337528 - 18337649
Alignment:
Q  1 ttttgatgtgattttactagaattttgtctgtttttggattttgtaacagatatgggtcgatgaaggtgagtaaagttgcaaaaccttagattttgggat 100  Q
    |||||||| ||||||||||| |||||| || |||| || || ||  |  ||| || |||| ||||||||| ||||||||||||| | | |||||| || |    
T  18337528 ttttgatgcgattttactaggattttgcctattttggggttctgctatggatttgagtcgttgaaggtgaataaagttgcaaaatcctggattttagg-t 18337626  T
Q  101 ttaagtcgtgattttgacaacaa 123  Q
     ||||||| ||||||||||||||    
T  18337627 ataagtcgggattttgacaacaa 18337649  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 39845648 - 39845716
Alignment:
Q  64 aaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaaagattgtga 132  Q
    |||||||||||||| | |||| |||  |||||| ||||||| ||||||| |||||||||| ||| ||||    
T  39845648 aaggtgagtaaagtcgtaaaatcttgaattttgagatttaaatcgtgatcttgacaacaatgatggtga 39845716  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 26879165 - 26879109
Alignment:
Q  67 gtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||||||||||||||| |||||||| ||||||||||||| || |||||  |||||||    
T  26879165 gtgagtaaagttgcaataccttagagtttgggatttaaggcgcgatttcaacaacaa 26879109  T

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Target: scaffold0048 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 48850 - 48916
Alignment:
Q  57 gtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||| ||||||||| |||||||||||||   |||||||| ||||||||||||  ||||| |||||||    
T  48850 gtcgttgaaggtgaataaagttgcaaaattctagattttaggatttaagtcggaattttcacaacaa 48916  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 5422810 - 5422876
Alignment:
Q  57 gtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||| ||||||||| ||||||||||||| | |  ||||| | |||||||||| ||||||||||||||    
T  5422810 gtcgttgaaggtgaataaagttgcaaaatcatgaattttagtatttaagtcgggattttgacaacaa 5422876  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 17250124 - 17250058
Alignment:
Q  57 gtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||| |||||||||  |||||||||||| | | |||||| |||||||||||| |||||| |||||||    
T  17250124 gtcgttgaaggtgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaacaa 17250058  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 10958254 - 10958315
Alignment:
Q  62 tgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    ||||||||||| |||| |||||| | |  |||||| ||||||||||| ||||||||||||||    
T  10958254 tgaaggtgagtcaagtcgcaaaatcctgaattttgagatttaagtcgcgattttgacaacaa 10958315  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 26053363 - 26053424
Alignment:
Q  62 tgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||||||||  ||||| |||||| | ||||||||  ||||||||||| ||||||||||||||    
T  26053363 tgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaa 26053424  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 26073416 - 26073477
Alignment:
Q  62 tgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||||||||  ||||| |||||| | ||||||||  ||||||||||| ||||||||||||||    
T  26073416 tgaaggtgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaa 26073477  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 11327655 - 11327699
Alignment:
Q  79 gcaaaaccttagattttgggatttaagtcgtgattttgacaacaa 123  Q
    |||||||||| |||||| || ||||||||| ||||||||||||||    
T  11327655 gcaaaaccttggattttaggttttaagtcgggattttgacaacaa 11327699  T

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Target: scaffold0186 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 8510 - 8437
Alignment:
Q  57 gtcgatgaaggtgagtaaagttgcaaaaccttagattttgggatttaagtcgtgattttgacaacaaagattgt 130  Q
    |||| |||||||||  ||||| |||||| | | |||||| |||||||||| | |||||||||||||| ||||||    
T  8510 gtcgttgaaggtgaagaaagtcgcaaaatcgtggattttaggatttaagtagggattttgacaacaatgattgt 8437  T

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