View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_201 (Length: 266)
Name: NF1498_high_201
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_201 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 6514464 - 6514220
Alignment:
| Q |
18 |
gcctcaagatatgaaatcgtcaggtcatagttctgctcaagaatctgtcaatggggcttcaaatacacagctatttcctcgctagctgaaattttaatat |
117 |
Q |
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| T |
6514464 |
gcctcaagatatgaaatcgtcaggtcatagttctgctcaagaatcagtcaatggggcttcaaatacacagctatttcctcgctagctgaaattttaatat |
6514365 |
T |
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| Q |
118 |
tagctattgaagagagttttagatgtatttgcat----aattgttttaactttaatttcattagaattctatagtaaaatttagggatagtaaagtggaa |
213 |
Q |
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| T |
6514364 |
tagctattgaagagagttttagatgtatttgcataattaattgttttaact----tttcattagaattctacagtaaaatttagggatagtaaagtggaa |
6514269 |
T |
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| Q |
214 |
cagcctctctgttttgacccgcccaacttaagctcgtctaaaatggaac |
262 |
Q |
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| T |
6514268 |
cggcctctctgttttgacccgccccacttaagctcgtctaaaatggaac |
6514220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 6497102 - 6497025
Alignment:
| Q |
21 |
tcaagatatgaaatcgtcaggtcatagttctgctcaagaatctgtcaatggggcttcaaatacacagctatttcctcg |
98 |
Q |
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| T |
6497102 |
tcaagatatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaatacagagctgtatcctcg |
6497025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 6502430 - 6502373
Alignment:
| Q |
58 |
gaatctgtcaatggggcttcaaatacacagctatttcctcgctagctgaaattttaat |
115 |
Q |
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| T |
6502430 |
gaatcggtcaatggagcttcaaatacagagccttttcctcgctagttgtaattttaat |
6502373 |
T |
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