View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_202 (Length: 266)
Name: NF1498_high_202
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_202 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 28675002 - 28675147
Alignment:
| Q |
1 |
ataaataaaaataataaatacaagaaagtaatcaatattgaaaaccatgtaaagaagaaggtatctgcaaaaacctttggatcaagattttcctgctcgt |
100 |
Q |
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| T |
28675002 |
ataaataaaaataataaatacaagaaagtaatcaatattgaaaaccatgtaaagaagaaggtatctgcaaaaacctttggatcaagattttcttgctcgt |
28675101 |
T |
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| Q |
101 |
tcagatttgcatcttgttagcactagaggaaatgctatagattctc |
146 |
Q |
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| T |
28675102 |
tcagatttgcatcttgttagcactagaggaaatgctatagattctc |
28675147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 28675212 - 28675267
Alignment:
| Q |
211 |
cgctgaatcttcaggttctttgaaaaatctcaactttgaaactcaaacagactcac |
266 |
Q |
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| T |
28675212 |
cgctgaatcttcaagttctttgaaaaatctcaactttgaaactgaaacagactcac |
28675267 |
T |
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