View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_206 (Length: 261)
Name: NF1498_high_206
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_206 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 29026220 - 29026001
Alignment:
| Q |
2 |
atcaaatgaaatggtcaaaatgttgaacaaaccaatttaatatcagtttatgaggaaatctatggtaatatttagattatatatatgaaattgtgttgta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29026220 |
atcaaatgaaatggtcaaaatgttgaacaaaccaatttaatatcagtttatgagaaaatctatggtaatatttagattatatatatgaaattgtgttgta |
29026121 |
T |
|
| Q |
102 |
ataattgcacataactttgcataaagagtaataca--------ttatttatggtattggtaaatttcattcataaataatgtatg--tttagcttcataa |
191 |
Q |
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||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
29026120 |
ataattgcacataactttgcacaaagagtaatacattttttatttatatatggtattggtaaatttcatttataaataa-gtatgtttttagcttcataa |
29026022 |
T |
|
| Q |
192 |
tatttatctttgagaatgaaa |
212 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
29026021 |
tatttatctttgagaaagaaa |
29026001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 35145504 - 35145398
Alignment:
| Q |
2 |
atcaaatgaaatggtcaaaatgttgaacaaaccaatttaatatcagtttatgaggaaatctatggtaatatttagattatatatatgaaattgtgttgta |
101 |
Q |
| |
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||||||| || ||||||||||| |||||||||||||||||||| |||| || ||| |||||| |||||||||||||||||||||||||| |||||||| |
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| T |
35145504 |
atcaaataaattggtcaaaatgatgaacaaaccaatttaatattagttaataagggaatctacagtaatatttagattatatatatgaaacagtgttgta |
35145405 |
T |
|
| Q |
102 |
ataattg |
108 |
Q |
| |
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||||||| |
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| T |
35145404 |
ataattg |
35145398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 92
Target Start/End: Complemental strand, 36068283 - 36068193
Alignment:
| Q |
2 |
atcaaatgaaatggtcaaaatgttgaacaaaccaatttaatatcagtttatgaggaaatctatggtaatatttagattatatatatgaaat |
92 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| || |||||||| |||||| ||||||||| |
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| T |
36068283 |
atcaaatgaaatggtcaaaatgttgaacaaaccaatttaatattagttgatgagaaaatctacggcaatatttacattatacatatgaaat |
36068193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 27593553 - 27593625
Alignment:
| Q |
3 |
tcaaatgaaatggtcaaaatgttgaacaaaccaatttaatatcagtttatgaggaaatctatggtaatattta |
75 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
27593553 |
tcaaatgaaatggtcaaaatgttgaacaaaccaatttaatattagttaatgagaaaatctatggtaatattta |
27593625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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