View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_209 (Length: 256)

Name: NF1498_high_209
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_209
NF1498_high_209
[»] chr3 (13 HSPs)
chr3 (126-256)||(19401445-19401575)
chr3 (126-195)||(18017739-18017808)
chr3 (126-200)||(19458624-19458698)
chr3 (129-197)||(18110114-18110182)
chr3 (18-61)||(19401337-19401380)
chr3 (126-197)||(17951505-17951576)
chr3 (126-196)||(16679047-16679117)
chr3 (126-200)||(17725792-17725866)
chr3 (27-61)||(18017639-18017673)
chr3 (126-200)||(19027021-19027095)
chr3 (126-200)||(25464777-25464852)
chr3 (126-200)||(18149107-18149181)
chr3 (131-200)||(19439847-19439916)
[»] chr4 (1 HSPs)
chr4 (126-200)||(2708786-2708860)
[»] chr2 (1 HSPs)
chr2 (126-166)||(16437567-16437607)
[»] chr8 (1 HSPs)
chr8 (131-200)||(8461306-8461373)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 19401445 - 19401575
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatatgttactgtattacttgttgtaannn 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  19401445 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatatgttactgtattacttgttgtaattt 19401544  T
Q  226 nnnncttgaattgtaattttttatacaagtt 256  Q
        |||||||||||||||||||||||||||    
T  19401545 ttttcttgaattgtaattttttatacaagtt 19401575  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 18017739 - 18017808
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagcc 195  Q
    |||||||||||| ||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||    
T  18017739 caggtgattatgtatgtggaagatcctgcactgttttgaaaatcgttgatataattttccaaacagagcc 18017808  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 19458624 - 19458698
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    |||||||||||   |||||||||||||||  ||||||||||||| | ||||||||||||||||||||||||||||    
T  19458624 caggtgattatatttgtggaagatcctgcgctgttatgcaaatcatggatataattttccaaacagagccaatat 19458698  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 18110114 - 18110182
Alignment:
Q  129 gtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaa 197  Q
    ||||||||| |||||||||||||| || || |||||||||| ||||||||||||| |||||||||||||    
T  18110114 gtgattatgtatgtggaagatcctacactgctatgcaaatcgttgatataatttttcaaacagagccaa 18110182  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 19401337 - 19401380
Alignment:
Q  18 atatagatcagtattttgttttattcttggatcagactaaagag 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19401337 atatagatcagtattttgttttattcttggatcagactaaagag 19401380  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 17951505 - 17951576
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaa 197  Q
    |||||||||||| ||||||||||||||  | || |||| ||||| |||||||||||| ||||||||||||||    
T  17951505 caggtgattatgtatgtggaagatcctatactgctatggaaatcgttgatataatttaccaaacagagccaa 17951576  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 16679047 - 16679117
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagcca 196  Q
    ||||||||||||||||||||||||| ||||||||| ||||| || | || |||| ||||| ||||||||||    
T  16679047 caggtgattatgcatgtggaagatcttgcattgttttgcaagtcatagacataactttcccaacagagcca 16679117  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 17725866 - 17725792
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    |||||||||||   ||||| ||| |||||| |||||| |||||| | ||||||||||||||||| ||||||||||    
T  17725866 caggtgattatatttgtggcagaacctgcactgttattcaaatcgtggatataattttccaaactgagccaatat 17725792  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 18017639 - 18017673
Alignment:
Q  27 agtattttgttttattcttggatcagactaaagag 61  Q
    |||||||||||||||||||||||||||||||||||    
T  18017639 agtattttgttttattcttggatcagactaaagag 18017673  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 19027095 - 19027021
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    |||||||||||   ||||| ||| |||||| |||||| |||||| | ||||||||||||||||| ||||||||||    
T  19027095 caggtgattatatttgtggcagaacctgcactgttattcaaatcgtggatataattttccaaactgagccaatat 19027021  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 25464777 - 25464852
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcat-tgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    ||||| ||||||||| ||| ||||||||||  ||||||||||||  | |||||||||||| ||| |||||||||||    
T  25464777 caggtcattatgcatatggcagatcctgcaaatgttatgcaaatggtggatataattttcaaaatagagccaatat 25464852  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 18149107 - 18149181
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    |||||||||||  ||||  ||||| ||||||| || |||||||| | ||||||||||||||||| |||| |||||    
T  18149107 caggtgattattaatgtacaagattctgcatttttttgcaaatcgtggatataattttccaaactgagcgaatat 18149181  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 19439847 - 19439916
Alignment:
Q  131 gattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    |||||||| ||||  |||||| ||||||||||  ||||| | |||||||||||| ||| |||||||||||    
T  19439847 gattatgcttgtgccagatccggcattgttatcgaaatcgtggatataattttcaaaatagagccaatat 19439916  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 2708860 - 2708786
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    |||||| |||||| ||||| || ||||||||||||||||||||  | ||| |||||||||||| |||||||||||    
T  2708860 caggtggttatgcgtgtggcagttcctgcattgttatgcaaattgtggatgtaattttccaaagagagccaatat 2708786  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 16437567 - 16437607
Alignment:
Q  126 caggtgattatgcatgtggaagatcctgcattgttatgcaa 166  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  16437567 caggtgattatgcatgtgggagatcctgcattgttatgcaa 16437607  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 8461306 - 8461373
Alignment:
Q  131 gattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 200  Q
    |||||||||||||| |||||||||||| ||||  || || | |||||||||||| ||| |||||||||||    
T  8461306 gattatgcatgtggcagatcctgcatttttat--aagtcgtggatataattttctaaatagagccaatat 8461373  T

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