View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_210 (Length: 256)
Name: NF1498_high_210
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_210 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 43612211 - 43612052
Alignment:
| Q |
86 |
agaagtgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtctctgcttctagatgcaatcctctctaacatgcttcatcaa |
185 |
Q |
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| T |
43612211 |
agaagtgggaatttctaaaatacaagtgcctagacagaaacacatccctgtttccaagtcccagcttctagatgcaatcctctctaacatgcttcatcaa |
43612112 |
T |
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| Q |
186 |
gatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
245 |
Q |
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| T |
43612111 |
gatactgctcatcactttcgccttctcacctcgtaagtactatcaatttcctatattcat |
43612052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 43612280 - 43612235
Alignment:
| Q |
20 |
acaagtgaggcagagtgaaaaccccaacaacaagaaaaactccaag |
65 |
Q |
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| T |
43612280 |
acaagtgaggcagagtgaaaaccccaacaacaagaaaaactccaag |
43612235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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