View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_211 (Length: 255)

Name: NF1498_high_211
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_211
NF1498_high_211
[»] chr8 (2 HSPs)
chr8 (36-255)||(3385965-3386184)
chr8 (53-99)||(37466468-37466514)
[»] chr5 (1 HSPs)
chr5 (6-52)||(15807444-15807490)
[»] chr6 (3 HSPs)
chr6 (53-104)||(29734438-29734489)
chr6 (55-104)||(10401950-10401999)
chr6 (55-99)||(19680547-19680591)
[»] chr4 (7 HSPs)
chr4 (53-104)||(13483181-13483232)
chr4 (53-104)||(49649147-49649198)
chr4 (53-104)||(52353833-52353884)
chr4 (53-99)||(2472892-2472938)
chr4 (56-98)||(20943622-20943664)
chr4 (53-98)||(41534218-41534263)
chr4 (60-96)||(22593644-22593680)
[»] chr7 (3 HSPs)
chr7 (53-99)||(33316147-33316193)
chr7 (53-98)||(2443342-2443387)
chr7 (55-99)||(1694490-1694534)
[»] chr3 (2 HSPs)
chr3 (53-99)||(49492033-49492079)
chr3 (55-104)||(45301187-45301236)
[»] chr1 (1 HSPs)
chr1 (60-104)||(29823782-29823826)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 36 - 255
Target Start/End: Complemental strand, 3386184 - 3385965
Alignment:
Q  36 tgtattaccataccatttgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaannnnnnnngaaggactaaaaatcgaagaaac 135  Q
    |||||| ||||| ||||| |||| ||||||||| |||||||||||| ||||| |||| |||||||| ||        |||||| ||||||||||||||||    
T  3386184 tgtattgccatatcatttaaattatacatataaatttacttaaaaggagagattaaatgtgaagtt-aaatttttttgaaggattaaaaatcgaagaaac 3386086  T
Q  136 tttttataagaactgaaacaaatagctggtatatttgtagaa-ccacaaacatatttaacaatatattctaactttgagcggtactatatggagtagccc 234  Q
    ||||||||||||||||||||||||| ||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3386085 tttttataagaactgaaacaaatagttggtatatttgtaaaaaccacatatatatttaacaatatattctaactttgagcggtactatatggagtagccc 3385986  T
Q  235 ctctattggtgtttggtaatt 255  Q
    |||||||||||||||||||||    
T  3385985 ctctattggtgtttggtaatt 3385965  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 37466468 - 37466514
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 99  Q
    |||||||||||||| ||||||||| |||| |||||| ||||||||||    
T  37466468 tgaattttacatatgagtttactttaaaggagagacaaaaagtgaag 37466514  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 15807444 - 15807490
Alignment:
Q  6 aggagcacagataaccaatatcagtaatggtgtattaccataccatt 52  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  15807444 aggagcacagatagccaatatcagtaatggtgtattgccataacatt 15807490  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 29734489 - 29734438
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 104  Q
    |||||| |||||||||||||||||||||  |||||||| |||||||| ||||    
T  29734489 tgaattctacatataagtttacttaaaatgagagactagaagtgaagatgaa 29734438  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 10401999 - 10401950
Alignment:
Q  55 aattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 104  Q
    |||| ||||||| ||||||||| ||||||||||| |||||||||| ||||    
T  10401999 aattatacatatgagtttactttaaagaagagaccaaaagtgaagctgaa 10401950  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 19680591 - 19680547
Alignment:
Q  55 aattttacatataagtttacttaaaagaagagactaaaagtgaag 99  Q
    |||||||||||||||||||||| |||| || ||| ||||||||||    
T  19680591 aattttacatataagtttactttaaaggagggaccaaaagtgaag 19680547  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 13483181 - 13483232
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 104  Q
    |||||||||||||| ||||||||| ||||||||||  |||||||||| ||||    
T  13483181 tgaattttacatatgagtttactttaaagaagagatcaaaagtgaagatgaa 13483232  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 49649147 - 49649198
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 104  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||||||| ||||    
T  49649147 tgaattatacatatgagtttactttaaagaagagaccaaaagtgaagatgaa 49649198  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 52353884 - 52353833
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 104  Q
    |||||| ||||||| ||||||||| |||||||||||||||| ||||| ||||    
T  52353884 tgaattctacatatgagtttactttaaagaagagactaaaattgaagatgaa 52353833  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 2472892 - 2472938
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 99  Q
    |||||||||||||  |||||||||||||| |||||| ||||||||||    
T  2472892 tgaattttacatactagtttacttaaaaggagagaccaaaagtgaag 2472938  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 20943622 - 20943664
Alignment:
Q  56 attttacatataagtttacttaaaagaagagactaaaagtgaa 98  Q
    ||||||||||||||||||||| |||| || |||||||||||||    
T  20943622 attttacatataagtttactttaaaggagggactaaaagtgaa 20943664  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 41534263 - 41534218
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaa 98  Q
    ||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  41534263 tgaattttatatattagtttactttaaagaagagactaaaaatgaa 41534218  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 22593680 - 22593644
Alignment:
Q  60 tacatataagtttacttaaaagaagagactaaaagtg 96  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  22593680 tacacataagtttacttaaaagtagagactaaaagtg 22593644  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 33316193 - 33316147
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 99  Q
    |||||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  33316193 tgaattttacatatgagtttactttaaagaagtgaccaaaagtgaag 33316147  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 2443387 - 2443342
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaa 98  Q
    |||||| ||||||| ||||||||| ||||||||||| |||||||||    
T  2443387 tgaattctacatatgagtttactttaaagaagagaccaaaagtgaa 2443342  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 1694534 - 1694490
Alignment:
Q  55 aattttacatataagtttacttaaaagaagagactaaaagtgaag 99  Q
    ||||||| |||| ||||||||| ||||||||||| ||||||||||    
T  1694534 aattttatatatgagtttactttaaagaagagaccaaaagtgaag 1694490  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 49492033 - 49492079
Alignment:
Q  53 tgaattttacatataagtttacttaaaagaagagactaaaagtgaag 99  Q
    |||||| |||| || ||||||||||||||||||||| ||||||||||    
T  49492033 tgaattctacacatgagtttacttaaaagaagagaccaaaagtgaag 49492079  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 45301187 - 45301236
Alignment:
Q  55 aattttacatataagtttacttaaaagaagagactaaaagtgaagttgaa 104  Q
    ||||||| |||| ||||||||| ||||| |||||||||||||||| ||||    
T  45301187 aattttaaatatgagtttactttaaagatgagactaaaagtgaagatgaa 45301236  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 29823782 - 29823826
Alignment:
Q  60 tacatataagtttacttaaaagaagagactaaaagtgaagttgaa 104  Q
    ||||||| |||||||||||||| |||||| |||||||||| ||||    
T  29823782 tacatatgagtttacttaaaaggagagaccaaaagtgaagatgaa 29823826  T

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