View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_217 (Length: 252)
Name: NF1498_high_217
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_217 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 37562617 - 37562384
Alignment:
| Q |
1 |
tgcgcttaatatgagtaaaggcttgtcatttttgtctacttttttgctcttcctcacctcgcaacagcataacaacaagcctattaagattataattcct |
100 |
Q |
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| T |
37562617 |
tgcgcttaatatgagtaaaggcttgtcatttttgtctacttttttgctcttcctcacctcgcgacagcataacaacaagcctattaagattataattcct |
37562518 |
T |
|
| Q |
101 |
gatgcagttacagcaacaataattgctttccgttgtttgtcatcatgcgttgaatcaaaagtagaatgaggaggaggtggtggtggcggtggtgcaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37562517 |
gatgcagttacagcaacaataattgctttccgttgtttgtcatcatgcgttgaatcaaaagtagaatgaggaggaggtggtggtggcggtggtgcaaata |
37562418 |
T |
|
| Q |
201 |
gaaaccaaaaatcgtcatatgagtgctcgggagt |
234 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
37562417 |
gaaaccaaaaatcgtcatatgagtgctcaggagt |
37562384 |
T |
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