View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_22 (Length: 581)
Name: NF1498_high_22
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 407 - 561
Target Start/End: Complemental strand, 17783300 - 17783146
Alignment:
| Q |
407 |
tagcaaatagtaaattagataaaaatccagttactttatttagcagcataaggagaataaagtattcatattcagtgcttctaaattcatgttccaataa |
506 |
Q |
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| T |
17783300 |
tagcaaatagtaaattacataaaaatccagttactttatttagcagcataaggagaataaagtattaatattcagtgcttctaaattcatgttccaataa |
17783201 |
T |
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| Q |
507 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccag |
561 |
Q |
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| T |
17783200 |
tgcttttcagtttggcaaccaacttctcatgaggaggaagtgtctccttcaccag |
17783146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 17783494 - 17783382
Alignment:
| Q |
213 |
gcaaattttattaataaaagtctatgcacaagacgaccagggacgggtaagacagaaactacaagcaacggacgtcgtatataagtggaacctcaaaagg |
312 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17783494 |
gcaaattttattaataaaagtccatgcacaagacgaccagggacgggtaagacagaaactacaagcaacggacgtcgtacataagtggaacctcaaaaga |
17783395 |
T |
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| Q |
313 |
aaatgcatacacc |
325 |
Q |
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| T |
17783394 |
aaatgcatacacc |
17783382 |
T |
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