View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1498_high_228 (Length: 248)

Name: NF1498_high_228
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1498_high_228
NF1498_high_228
[»] chr4 (19 HSPs)
chr4 (4-135)||(52673147-52673282)
chr4 (4-132)||(29544114-29544246)
chr4 (4-132)||(46079292-46079424)
chr4 (37-76)||(1208706-1208745)
chr4 (26-77)||(30643603-30643654)
chr4 (28-75)||(31455907-31455954)
chr4 (33-79)||(51853502-51853548)
chr4 (26-79)||(5052117-5052170)
chr4 (33-66)||(53176875-53176908)
chr4 (95-127)||(46079443-46079475)
chr4 (26-125)||(11077820-11077923)
chr4 (34-76)||(40202260-40202302)
chr4 (33-63)||(44015437-44015467)
chr4 (34-63)||(19473076-19473105)
chr4 (10-79)||(29693207-29693276)
chr4 (26-63)||(50041839-50041876)
chr4 (26-63)||(50049061-50049098)
chr4 (79-131)||(9116198-9116250)
chr4 (36-64)||(29724373-29724401)
[»] chr1 (21 HSPs)
chr1 (4-134)||(48914935-48915069)
chr1 (4-134)||(48915326-48915460)
chr1 (4-134)||(48915127-48915259)
chr1 (4-135)||(50539677-50539812)
chr1 (26-135)||(19456260-19456372)
chr1 (1-132)||(48843380-48843504)
chr1 (4-123)||(27907710-27907822)
chr1 (26-79)||(19431399-19431452)
chr1 (26-79)||(24671185-24671238)
chr1 (4-61)||(27032326-27032383)
chr1 (4-76)||(5398034-5398106)
chr1 (28-79)||(17923857-17923908)
chr1 (26-134)||(51748581-51748682)
chr1 (34-134)||(26478599-26478703)
chr1 (34-132)||(49177432-49177534)
chr1 (25-79)||(3950304-3950358)
chr1 (26-75)||(11872201-11872250)
chr1 (33-62)||(39004654-39004683)
chr1 (26-79)||(46325599-46325652)
chr1 (34-79)||(49315743-49315788)
chr1 (28-76)||(15106239-15106287)
[»] chr7 (22 HSPs)
chr7 (4-134)||(2628386-2628520)
chr7 (37-132)||(9488721-9488821)
chr7 (4-134)||(46425278-46425401)
chr7 (4-135)||(18867887-18868011)
chr7 (33-132)||(32279246-32279349)
chr7 (4-133)||(16876678-16876800)
chr7 (26-134)||(34328134-34328235)
chr7 (4-61)||(23185929-23185986)
chr7 (26-79)||(33884052-33884105)
chr7 (33-78)||(37685200-37685245)
chr7 (33-77)||(43368497-43368541)
chr7 (26-79)||(42971652-42971705)
chr7 (39-75)||(7352786-7352822)
chr7 (37-79)||(11369064-11369106)
chr7 (33-66)||(15667904-15667937)
chr7 (26-63)||(42266449-42266486)
chr7 (95-127)||(16876819-16876851)
chr7 (79-131)||(23185867-23185918)
chr7 (95-127)||(23186005-23186037)
chr7 (26-74)||(33747985-33748033)
chr7 (99-127)||(34328072-34328100)
chr7 (26-62)||(42691095-42691131)
[»] chr3 (18 HSPs)
chr3 (4-129)||(10688615-10688744)
chr3 (33-134)||(47548872-47548977)
chr3 (6-132)||(50700026-50700151)
chr3 (1-134)||(39994195-39994321)
chr3 (4-135)||(4037148-4037272)
chr3 (4-132)||(49279496-49279616)
chr3 (4-131)||(11233513-11233633)
chr3 (79-130)||(34272407-34272458)
chr3 (28-79)||(39485479-39485530)
chr3 (4-61)||(39972999-39973056)
chr3 (79-127)||(39350750-39350798)
chr3 (103-134)||(39973082-39973113)
chr3 (46-79)||(132151-132184)
chr3 (26-63)||(20345080-20345117)
chr3 (26-79)||(46348401-46348454)
chr3 (95-127)||(4037097-4037129)
chr3 (37-73)||(42466972-42467008)
chr3 (95-127)||(49279445-49279477)
[»] chr2 (18 HSPs)
chr2 (26-134)||(41069623-41069735)
chr2 (4-134)||(6752024-6752158)
chr2 (4-79)||(39728993-39729068)
chr2 (4-134)||(11226153-11226279)
chr2 (4-134)||(15141887-15142010)
chr2 (26-106)||(36562721-36562802)
chr2 (4-132)||(23395940-23396063)
chr2 (4-135)||(31750471-31750604)
chr2 (6-131)||(19037010-19037128)
chr2 (26-79)||(32832602-32832655)
chr2 (4-61)||(3496805-3496862)
chr2 (26-73)||(8209322-8209369)
chr2 (28-77)||(13477700-13477749)
chr2 (33-66)||(33433440-33433473)
chr2 (34-63)||(38529905-38529934)
chr2 (34-62)||(8044317-8044345)
chr2 (95-127)||(19037168-19037200)
chr2 (95-127)||(39707503-39707535)
[»] chr5 (18 HSPs)
chr5 (6-131)||(2651631-2651751)
chr5 (34-134)||(34928831-34928935)
chr5 (34-131)||(22658864-22658965)
chr5 (79-134)||(37480357-37480412)
chr5 (37-131)||(14151895-14151993)
chr5 (19-135)||(27554872-27554992)
chr5 (26-79)||(33953157-33953210)
chr5 (26-79)||(19824613-19824666)
chr5 (157-205)||(25089454-25089502)
chr5 (33-79)||(22029859-22029905)
chr5 (79-134)||(22473611-22473665)
chr5 (28-79)||(33922871-33922922)
chr5 (26-76)||(31882600-31882650)
chr5 (4-134)||(37515524-37515646)
chr5 (26-79)||(2630808-2630861)
chr5 (36-77)||(18623597-18623638)
chr5 (157-205)||(25147423-25147472)
chr5 (26-79)||(42321089-42321142)
[»] chr8 (11 HSPs)
chr8 (4-134)||(4834920-4835054)
chr8 (4-131)||(33938556-33938676)
chr8 (79-135)||(16467674-16467730)
chr8 (79-131)||(16499773-16499825)
chr8 (26-63)||(20896212-20896249)
chr8 (79-131)||(16508698-16508750)
chr8 (4-66)||(41474300-41474362)
chr8 (26-63)||(44132898-44132935)
chr8 (25-61)||(16467627-16467663)
chr8 (95-127)||(16508846-16508878)
chr8 (88-132)||(29768303-29768347)
[»] chr6 (13 HSPs)
chr6 (4-135)||(9928268-9928392)
chr6 (4-134)||(22469706-22469829)
chr6 (33-79)||(457685-457731)
chr6 (6-61)||(7506641-7506696)
chr6 (26-79)||(28963599-28963652)
chr6 (95-127)||(22469655-22469687)
chr6 (26-60)||(6139347-6139381)
chr6 (4-61)||(31743867-31743922)
chr6 (34-79)||(3037383-3037428)
chr6 (34-75)||(8585739-8585780)
chr6 (26-63)||(28067341-28067378)
chr6 (79-131)||(31743933-31743986)
chr6 (26-79)||(9549395-9549452)
[»] scaffold0176 (3 HSPs)
scaffold0176 (79-132)||(15166-15219)
scaffold0176 (92-125)||(15058-15091)
scaffold0176 (4-60)||(15098-15154)
[»] scaffold0289 (1 HSPs)
scaffold0289 (33-66)||(20321-20354)
[»] scaffold0085 (1 HSPs)
scaffold0085 (34-63)||(31608-31637)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 52673282 - 52673147
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    |||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||    ||||||||| ||||| |||||    
T  52673282 tctatctctctcttaccaacatattctctctcatcaaaataatttattttaattattcattcatcattctctctcatctaaaatgaacctatgtcaccaa 52673183  T
Q  100 tgacaccaaaaaactatggcacccaagtatttcccg 135  Q
    ||||||||||||||||||||||||||||||||||||    
T  52673182 tgacaccaaaaaactatggcacccaagtatttcccg 52673147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 29544246 - 29544114
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaa 99  Q
    ||||||||||| ||  ||||  ||||||  ||||||||||||||||||||||||||||||| | |||| |||||||    |||||||| ||||| |||||    
T  29544246 tctatctctctattaacaactcattctctatcatctaaataatttattttaatcattcatttatcattttctctcatctaaaatgaacatatgtcaccaa 29544147  T
Q  100 tgacaccaaaaaactatggcacccaagtatttc 132  Q
    || ||||||||||||||| ||||||||||||||    
T  29544146 tggcaccaaaaaactatgacacccaagtatttc 29544114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 46079424 - 46079292
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||| ||||||  ||||  |||||| |||||||||||||||||||||||||||||||| | |||||||||||    ||||||||| ||||| | |||    
T  46079424 tctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcattcattgatcattctctctcatctaaaatgaacctatgtcatcaa 46079325  T
Q  100 tgacaccaaaaaactatggcacccaagtatttc 132  Q
    || ||||||||||||||| || |||||||||||    
T  46079324 tggcaccaaaaaactatgtcatccaagtatttc 46079292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 1208745 - 1208706
Alignment:
Q  37 tctaaataatttattttaatcattcattcaccattctctc 76  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  1208745 tctaaataatttattttaatcattcattcatcattctctc 1208706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 30643654 - 30643603
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctct 77  Q
    |||||| ||||||||||||||||||||||||||||||| || |||| |||||    
T  30643654 attctctctcatctaaataatttattttaatcattcatccatcattatctct 30643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 31455954 - 31455907
Alignment:
Q  28 tctcgctcatctaaataatttattttaatcattcattcaccattctct 75  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||    
T  31455954 tctctctcatctaaataatttattttaatcattcattcttcattctct 31455907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 51853502 - 51853548
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||||    
T  51853502 ctcatctaaataagttattttaattattcattcaacattctctctca 51853548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 5052117 - 5052170
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||| ||||||||||||||||||||| ||| | ||||||||||||    
T  5052117 attctctctcatcaaaataatttattttaatcatttatttatcattctctctca 5052170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 53176875 - 53176908
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattca 66  Q
    ||||||||||||||||||||||||||||||||||    
T  53176875 ctcatctaaataatttattttaatcattcattca 53176908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 46079443 - 46079475
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    |||||||||||||||||||||||||||||||||    
T  46079443 accaatgacaccaaaaaactatggcacccaagt 46079475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 11077923 - 11077820
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctc----tcaaaatgaacttatgttaccaatgacaccaaaaaactatggcac 121  Q
    |||||| ||||||||||||| |  ||||||||||||||  | |||||||||     ||||||||||| |||  ||||||| |||| |||||||||| |||    
T  11077923 attctctctcatctaaataactatttttaatcattcatagatcattctctcccatccaaaatgaactaatgccaccaatgtcacccaaaaactatgtcac 11077824  T
Q  122 ccaa 125  Q
    ||||    
T  11077823 ccaa 11077820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 40202302 - 40202260
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctctc 76  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||    
T  40202302 tcatctaaataatttattttaataattcattcatcattatctc 40202260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 44015467 - 44015437
Alignment:
Q  33 ctcatctaaataatttattttaatcattcat 63  Q
    |||||||||||||||||||||||||||||||    
T  44015467 ctcatctaaataatttattttaatcattcat 44015437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 19473105 - 19473076
Alignment:
Q  34 tcatctaaataatttattttaatcattcat 63  Q
    ||||||||||||||||||||||||||||||    
T  19473105 tcatctaaataatttattttaatcattcat 19473076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 29693207 - 29693276
Alignment:
Q  10 tctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    ||||||||  ||||||||| || || || |||||||||||||||||| ||| ||| | ||||||||||||    
T  29693207 tctctcttaacaacatattatctcttatttaaataatttattttaattatttatttatcattctctctca 29693276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 50041876 - 50041839
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcat 63  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  50041876 attctctctcatcaaaataatttattttaatcattcat 50041839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 50049098 - 50049061
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcat 63  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  50049098 attctctctcatcaaaataatttattttaatcattcat 50049061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 9116250 - 9116198
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt 131  Q
    ||||||||| ||||| | |||||| ||||||||| |||||||||||| |||||    
T  9116250 aaaatgaacctatgtcatcaatgagaccaaaaaattatggcacccaaatattt 9116198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 29724401 - 29724373
Alignment:
Q  36 atctaaataatttattttaatcattcatt 64  Q
    |||||||||||||||||||||||||||||    
T  29724401 atctaaataatttattttaatcattcatt 29724373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 48915069 - 48914935
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||||||||||  ||||  |||||| |||||| ||||||||||||||||||||||||||| |||||||||||    ||||||||||||||| |||||    
T  48915069 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgtcaccaa 48914970  T
Q  100 tgacaccaaaaaactatggcacccaagtatttccc 134  Q
    || ||| ||||||||||||||||||||||||||||    
T  48914969 tgtcacaaaaaaactatggcacccaagtatttccc 48914935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 48915460 - 48915326
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||||||||||  ||||  |||||| |||||| ||||||||||||||||||||||||||| |||||||||||    ||||||||||||||| |||||    
T  48915460 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgtcaccaa 48915361  T
Q  100 tgacaccaaaaaactatggcacccaagtatttccc 134  Q
    || ||| ||||||||||||||||||||||||||||    
T  48915360 tgtcacaaaaaaactatggcacccaagtatttccc 48915326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 48915259 - 48915127
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctc-tc-aaaatgaacttatgttaccaatg 101  Q
    ||||||||||||||  ||||  |||||| |||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||| |||||||    
T  48915259 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctcatctaaaatgaacctatgtcaccaatg 48915160  T
Q  102 acaccaaaaaactatggcacccaagtatttccc 134  Q
     ||| ||||||||||||||||||||||||||||    
T  48915159 tcacaaaaaaactatggcacccaagtatttccc 48915127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 50539812 - 50539677
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||||||||||  ||||  ||||||  | || |||||||||||||||||||||  ||||| |||| ||||||    ||||||||||||||| |||||    
T  50539812 tctatctctctcttaacaactcattctcttttatttaaataatttattttaatcatctattcatcattatctctcttctaaaatgaacttatgtcaccaa 50539713  T
Q  100 tgacaccaaaaaactatggcacccaagtatttcccg 135  Q
    ||||||||| ||||||||||||||||||||||||||    
T  50539712 tgacaccaataaactatggcacccaagtatttcccg 50539677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 19456372 - 19456260
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcac 121  Q
    |||||| |||||||||||||||||||||||||||  ||||| |||||||||||    ||||||||  ||||| |||||||||||| |||| |||||||||    
T  19456372 attctctctcatctaaataatttattttaatcatctattcatcattctctctcatctaaaatgaatctatgtcaccaatgacacc-aaaagctatggcac 19456274  T
Q  122 ccaagtatttcccg 135  Q
    ||||||||||||||    
T  19456273 ccaagtatttcccg 19456260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 48843380 - 48843504
Alignment:
Q  1 gtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaat 100  Q
    |||||||||||||||||  |||   |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| ||||||    
T  48843380 gtatctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaat 48843472  T
Q  101 gacaccaaaaaactatggcacccaagtatttc 132  Q
    | ||||||||||||||||||||||||||||||    
T  48843473 ggcaccaaaaaactatggcacccaagtatttc 48843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 27907710 - 27907822
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  ||    ||   ||| ||||||||| ||||| |||||||||    
T  27907710 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc--tc----tttcatct-aaaatgaacctatgtcaccaatgac 27907802  T
Q  104 accaaaaaactatggcaccc 123  Q
    ||||||||||||||||||||    
T  27907803 accaaaaaactatggcaccc 27907822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 19431452 - 19431399
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| ||||||||||||||||||||||||||||||| || |||||| |||||    
T  19431452 attctctctcatctaaataatttattttaatcattcatccatcattctgtctca 19431399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 24671185 - 24671238
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| ||||| |||||||||||||||||||||||||||| || |||||||||    
T  24671185 attctctctcatttaaataatttattttaatcattcattcatcactctctctca 24671238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 27032383 - 27032326
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc 61  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||    
T  27032383 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 27032326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 5398106 - 5398034
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctc 76  Q
    ||||||||||||||  | ||  |||||| |||||||||||| ||||||||||| ||||||||| |||||||||    
T  5398106 tctatctctctcttaaccactcattctctctcatctaaatagtttattttaataattcattcatcattctctc 5398034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 17923857 - 17923908
Alignment:
Q  28 tctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||| |||||||||||||||||||||||| |||||| || ||||||||||||    
T  17923857 tctctctcatctaaataatttattttaattattcatccaacattctctctca 17923908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 51748581 - 51748682
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaa 125  Q
    |||||| |||||||||||||||||||||||||||||  ||     | ||  | ||||||||  ||||| | ||||| |||||||||||||||||| ||||    
T  51748581 attctctctcatctaaataatttattttaatcattc--tc-----tttcatttaaaatgaatctatgtcatcaatggcaccaaaaaactatggcatccaa 51748673  T
Q  126 gtatttccc 134  Q
    |||||||||    
T  51748674 gtatttccc 51748682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 26478599 - 26478703
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtat 129  Q
    |||| ||||| |||||||||||| ||||||||| |||||||||||    ||||| ||| | ||| |||||| |||| ||||||||||| ||  ||| |||    
T  26478599 tcatttaaatgatttattttaattattcattcatcattctctctcatctaaaattaacctttgtcaccaataacactaaaaaactatgacattcaaatat 26478698  T
Q  130 ttccc 134  Q
    |||||    
T  26478699 ttccc 26478703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 49177432 - 49177534
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctctctc-----aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagta 128  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||     ||||||||   |||| || ||| ||||||||  |||||| ||||||||||    
T  49177432 tcatctaaataatttattttaatcattca-tcatcattttctctcatctaaaaatgaatcaatgtcactaataacaccaaaggactatgacacccaagta 49177530  T
Q  129 tttc 132  Q
    ||||    
T  49177531 tttc 49177534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 3950358 - 3950304
Alignment:
Q  25 tattctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||||  ||||| ||||||||||||||||||||||||  | ||||||||||||    
T  3950358 tattctctttcatcaaaataatttattttaatcattcatcgatcattctctctca 3950304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 11872250 - 11872201
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctct 75  Q
    |||||| |||||| |||||||||||| |||||||||| ||| ||||||||    
T  11872250 attctctctcatcaaaataatttattataatcattcaatcatcattctct 11872201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 39004654 - 39004683
Alignment:
Q  33 ctcatctaaataatttattttaatcattca 62  Q
    ||||||||||||||||||||||||||||||    
T  39004654 ctcatctaaataatttattttaatcattca 39004683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 46325652 - 46325599
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||| |||||| |||||||||||||||||  | ||||||||||||    
T  46325652 attctctctcatcaaaataacttattttaatcattcatctatcattctctctca 46325599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 49315788 - 49315743
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    ||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  49315788 tcatcaaaataatttattttaatcactcatctaccattctctctca 49315743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 15106239 - 15106287
Alignment:
Q  28 tctcgctcatctaaataatttattttaatcattcattcaccattctctc 76  Q
    |||| ||||| |||||||||||||||||||||||||  | |||||||||    
T  15106239 tctctctcatgtaaataatttattttaatcattcatctatcattctctc 15106287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 2628520 - 2628386
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaa 99  Q
    ||||||||||||||  ||||  |||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||    |||||||||||||| |||||    
T  2628520 tctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaatgaacttatgtcaccaa 2628421  T
Q  100 tgacaccaaaaaactatggcacccaagtatttccc 134  Q
    || |||||||||||||||||| |||||||||||||    
T  2628420 tggcaccaaaaaactatggcatccaagtatttccc 2628386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 9488821 - 9488721
Alignment:
Q  37 tctaaataatttattttaatcattcattcaccattctc-tctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt 131  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    |||||||||||||| | |||| ||||||||||| |||||||||||| |||||    
T  9488821 tctaaataatttattttaatcattcattcatcattctcctctcatctaaaatgaacttatgtcatcaataacaccaaaaaattatggcacccaaatattt 9488722  T
Q  132 c 132  Q
    |    
T  9488721 c 9488721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 46425401 - 46425278
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| ||||||| |    
T  46425401 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggc 46425309  T
Q  104 accaaaaaactatggcacccaagtatttccc 134  Q
    |||||||||||||||||||||||||||||||    
T  46425308 accaaaaaactatggcacccaagtatttccc 46425278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 135
Target Start/End: Complemental strand, 18868011 - 18867887
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| |||||||||    
T  18868011 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatgac 18867919  T
Q  104 accaaaaaactatggcacccaagtatttcccg 135  Q
    || |||||||||||||| ||||||||||||||    
T  18867918 acaaaaaaactatggcatccaagtatttcccg 18867887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 32279349 - 32279246
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagta 128  Q
    ||||| |||||||||||||||||| ||||||||| |||| ||||||    ||||||||| ||||| ||| ||||||||||||||||||| || |||| ||    
T  32279349 ctcatttaaataatttattttaattattcattcatcattttctctcatctaaaatgaacctatgtcaccgatgacaccaaaaaactatgacatccaaata 32279250  T
Q  129 tttc 132  Q
    ||||    
T  32279249 tttc 32279246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 16876800 - 16876678
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||||||| | | ||||| |    
T  16876800 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacttatatcatcaatggc 16876708  T
Q  104 accaaaaaactatggcacccaagtatttcc 133  Q
    ||||||||||||||||||||||||||||||    
T  16876707 accaaaaaactatggcacccaagtatttcc 16876678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 134
Target Start/End: Original strand, 34328134 - 34328235
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaa 125  Q
    |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  34328134 attctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaa 34328226  T
Q  126 gtatttccc 134  Q
    |||||||||    
T  34328227 gtatttccc 34328235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 23185986 - 23185929
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc 61  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||    
T  23185986 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 23185929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 33884105 - 33884052
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||||||||||||||||||||| || ||| |||||||||||||||    
T  33884105 attctctctcatctaaataatttattttaattatccatccaccattctctctca 33884052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 37685245 - 37685200
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattcaccattctctctc 78  Q
    ||||||||||||||||||||||||||||||| || |||||||||||    
T  37685245 ctcatctaaataatttattttaatcattcatccaacattctctctc 37685200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 43368541 - 43368497
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattcaccattctctct 77  Q
    ||||||||||||||||||||||||||||||| || ||||||||||    
T  43368541 ctcatctaaataatttattttaatcattcatccatcattctctct 43368497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 42971705 - 42971652
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||||||||||||||||||||||||||   || ||||||||||||    
T  42971705 attctctctcatctaaataatttattttaatcattcgcccaacattctctctca 42971652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 7352786 - 7352822
Alignment:
Q  39 taaataatttattttaatcattcattcaccattctct 75  Q
    |||||||||||||||||||||||||||| ||||||||    
T  7352786 taaataatttattttaatcattcattcaacattctct 7352822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 11369106 - 11369064
Alignment:
Q  37 tctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||||||||||||||||||||| || || ||||||||||||    
T  11369106 tctaaataatttattttaatcatttatccaacattctctctca 11369064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 15667904 - 15667937
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattca 66  Q
    ||||| ||||||||||||||||||||||||||||    
T  15667904 ctcatttaaataatttattttaatcattcattca 15667937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 42266486 - 42266449
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcat 63  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  42266486 attctcactcatttaaataatttattttaatcattcat 42266449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 16876819 - 16876851
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    ||||||| |||||||||||||||||||||||||    
T  16876819 accaatggcaccaaaaaactatggcacccaagt 16876851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 23185918 - 23185867
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt 131  Q
    |||||||||| |||| ||||||| ||| ||||||||||||||||||| |||||    
T  23185918 aaaatgaact-atgtcaccaatggcactaaaaaactatggcacccaaatattt 23185867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 23186005 - 23186037
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    ||||||| |||||||||||||||||||||||||    
T  23186005 accaatggcaccaaaaaactatggcacccaagt 23186037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 33747985 - 33748033
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctc 74  Q
    |||||| || |||||||||||||||||||||  |||||||| |||||||    
T  33747985 attctctcttatctaaataatttattttaattgttcattcatcattctc 33748033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 34328100 - 34328072
Alignment:
Q  99 atgacaccaaaaaactatggcacccaagt 127  Q
    |||||||||||||||||||||||||||||    
T  34328100 atgacaccaaaaaactatggcacccaagt 34328072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 42691131 - 42691095
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattca 62  Q
    |||||| |||||| |||||||||||||||||||||||    
T  42691131 attctctctcatcaaaataatttattttaatcattca 42691095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 10688615 - 10688744
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||||||| |||||||||||    ||||||||||||||| | |||    
T  10688615 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgtcatcaa 10688714  T
Q  100 tgacaccaaaaaactatggcacccaagtat 129  Q
    ||| ||||||||||||| ||||||||||||    
T  10688715 tgataccaaaaaactatagcacccaagtat 10688744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 134
Target Start/End: Original strand, 47548872 - 47548977
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagta 128  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||    |||||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  47548872 ctcatctaaataatttattttaatcatccattcaacattctctctcatctaaaatgaacctatgttaccaatggcaccaaaaaaccatggcacccaagta 47548971  T
Q  129 tttccc 134  Q
    ||||||    
T  47548972 tttccc 47548977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 50700026 - 50700151
Alignment:
Q  6 tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctc-tc-aaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||   |||| |||||| ||| |||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||| ||||||| |    
T  50700026 tatctctctctt---aacacattctctctcgtctaaataatttattttaatcatttattcatcattctctcatctaaaatgaacttatgtcaccaatggc 50700122  T
Q  104 accaaaaaactatggcacccaagtatttc 132  Q
    || |||||||||| ||| |||||||||||    
T  50700123 actaaaaaactatagcatccaagtatttc 50700151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 39994195 - 39994321
Alignment:
Q  1 gtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaat 100  Q
    |||||||||||||| ||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||| ||||||||| ||||||    
T  39994195 gtatctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaattaacttatgtcaccaat 39994287  T
Q  101 gacaccaaaaaactatggcacccaagtatttccc 134  Q
    ||||||||||||||||||||||||||||||||||    
T  39994288 gacaccaaaaaactatggcacccaagtatttccc 39994321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 4037148 - 4037272
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| ||||||| |    
T  4037148 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggc 4037240  T
Q  104 accaaaaaactatggcacccaagtatttcccg 135  Q
    ||||||||||||||||||||||||||||||||    
T  4037241 accaaaaaactatggcacccaagtatttcccg 4037272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 49279496 - 49279616
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  ||    ||   ||| ||||||||||||||  |||||||||    
T  49279496 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc--tc----tttcatct-aaaatgaacttatg-caccaatgac 49279587  T
Q  104 accaaaaaactatggcacccaagtatttc 132  Q
    | |||||||||||||||||||| ||||||    
T  49279588 atcaaaaaactatggcacccaaatatttc 49279616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 11233513 - 11233633
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  ||    ||   ||| ||||| ||||||||| | |||||||    
T  11233513 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc--tc----tttcatct-aaaataaacttatgtcatcaatgac 11233605  T
Q  104 accaaaaaactatggcacccaagtattt 131  Q
    || ||||||||||| |||||||||||||    
T  11233606 actaaaaaactatgacacccaagtattt 11233633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 34272458 - 34272407
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatt 130  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||| |||||||    
T  34272458 aaaatgaacctatgtcaccaataacaccaaaaaactatggcacctaagtatt 34272407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 39485530 - 39485479
Alignment:
Q  28 tctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||| ||||||||||||||||||||||||||||||| || | ||||||||||    
T  39485530 tctctctcatctaaataatttattttaatcattcatccaaccttctctctca 39485479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 39972999 - 39973056
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc 61  Q
    ||||||||||||||  ||||  |||||| |||||| ||||||||||||||||||||||    
T  39972999 tctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattc 39973056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 39350798 - 39350750
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagt 127  Q
    ||||||||| ||||  ||||||| |||||||||||||||||||||||||    
T  39350798 aaaatgaacctatggcaccaatggcaccaaaaaactatggcacccaagt 39350750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 134
Target Start/End: Original strand, 39973082 - 39973113
Alignment:
Q  103 caccaaaaaactatggcacccaagtatttccc 134  Q
    ||||||||||||||||||||||||||||||||    
T  39973082 caccaaaaaactatggcacccaagtatttccc 39973113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 132151 - 132184
Alignment:
Q  46 tttattttaatcattcattcaccattctctctca 79  Q
    ||||||||||||||||||||| ||||||||||||    
T  132151 tttattttaatcattcattcatcattctctctca 132184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 20345080 - 20345117
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcat 63  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  20345080 attctctctcatttaaataatttattttaatcattcat 20345117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 46348454 - 46348401
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| ||||| |||||| ||||| ||||| ||||||||| ||||||||||||    
T  46348454 attctctctcatttaaatagtttatcttaataattcattcatcattctctctca 46348401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 4037129 - 4037097
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    ||||||| |||||||||||||||||||||||||    
T  4037129 accaatggcaccaaaaaactatggcacccaagt 4037097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 42467008 - 42466972
Alignment:
Q  37 tctaaataatttattttaatcattcattcaccattct 73  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  42467008 tctaaataatttattttaattattcattcatcattct 42466972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 49279477 - 49279445
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    |||||||||||||||||||||||||| ||||||    
T  49279477 accaatgacaccaaaaaactatggcatccaagt 49279445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 41069735 - 41069623
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcac 121  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||    ||||||||| ||||| ||||||| |||||||||| ||||||||    
T  41069735 attctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctatgtcaccaatggcaccaaaaaattatggcac 41069636  T
Q  122 ccaagtatttccc 134  Q
    |||||||||||||    
T  41069635 ccaagtatttccc 41069623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 6752158 - 6752024
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||||||||||  |||| || | || |||||||||||||||||||||||||||||||| | |||||||||||    ||||||||||||||| | |||    
T  6752158 tctatctctctcttaacaacttactttctctcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacttatgtcatcaa 6752059  T
Q  100 tgacaccaaaaaactatggcacccaagtatttccc 134  Q
    ||  |||||||||||||||||||||||||||||||    
T  6752058 tggtaccaaaaaactatggcacccaagtatttccc 6752024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 39728993 - 39729068
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    ||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  39728993 tctatttctttcttaccaacatattctctctcatctaaataatttattttaatcattcattcatcattctctctca 39729068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 11226153 - 11226279
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||||||  |||||||||||    ||||||||| ||||| ||||     
T  11226153 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcatttaaaatgaacctatgtcacca- 11226251  T
Q  100 tgacaccaaaaaactatggcacccaagtatttccc 134  Q
           ||||||||||||||||||||||||||||    
T  11226252 -------aaaaaactatggcacccaagtatttccc 11226279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 15141887 - 15142010
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||| ||  |||| ||||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| |||||||||    
T  15141887 tctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatgac 15141979  T
Q  104 accaaaaaactatggcacccaagtatttccc 134  Q
    | |||||||||||||||||||||||||||||    
T  15141980 atcaaaaaactatggcacccaagtatttccc 15142010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 36562802 - 36562721
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctc-tcaaaatgaacttatgttaccaatgacacc 106  Q
    |||||| |||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||| ||| |||||||||||||    
T  36562802 attctctctcatctaaataatttattttactcattcattcatcattctctcataaaaatgaactaatggtaccaatgacacc 36562721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 23395940 - 23396063
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa 99  Q
    ||||||||||||||  ||||  ||||||  ||||||||||||||||||||||||||||||| | |||||||||||    ||||||||| |||||          
T  23395940 tctatctctctcttaacaactcattctctatcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacctatgt------ 23396033  T
Q  100 tgacaccaaaaaactatggcacccaagtatttc 132  Q
       ||||||||||||||||||||||||||||||    
T  23396034 ---caccaaaaaactatggcacccaagtatttc 23396063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 31750471 - 31750604
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaa 99  Q
    ||||||||||||||  |||   ||| || |||||||||||  ||||||||||||||||||||| |||||||| | |    |||||||  ||||| |||||    
T  31750471 tctatctctctcttaacaattcattttctctcatctaaat--tttattttaatcattcattcatcattctctgtgatctaaaatgaatatatgtcaccaa 31750568  T
Q  100 tgacaccaaaaaactatggcacccaagtatttcccg 135  Q
    || |||||| ||||||||||||| ||||||||||||    
T  31750569 tggcaccaacaaactatggcacctaagtatttcccg 31750604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 19037128 - 19037010
Alignment:
Q  6 tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacac 105  Q
    ||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| ||||||| |||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggcac 19037036  T
Q  106 caaaaaactatggcacccaagtattt 131  Q
     |||||||||||||||||||||||||    
T  19037035 taaaaaactatggcacccaagtattt 19037010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 32832655 - 32832602
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||||||||||    
T  32832655 attctctctcatctaaataatttattttaatcattcatccaacattctctctca 32832602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 3496862 - 3496805
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc 61  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||    
T  3496862 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 3496805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 8209322 - 8209369
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattct 73  Q
    |||||| |||||| ||||||||||||||||||||||||| ||||||||    
T  8209322 attctctctcatcaaaataatttattttaatcattcatttaccattct 8209369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 13477749 - 13477700
Alignment:
Q  28 tctcgctcatctaaataatttattttaatcattcattcaccattctctct 77  Q
    |||| ||||| ||||||| |||||||||||||||||||| ||||||||||    
T  13477749 tctctctcatttaaataaattattttaatcattcattcatcattctctct 13477700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 66
Target Start/End: Complemental strand, 33433473 - 33433440
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattca 66  Q
    ||||||||||||||||||||||||||||||||||    
T  33433473 ctcatctaaataatttattttaatcattcattca 33433440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 38529934 - 38529905
Alignment:
Q  34 tcatctaaataatttattttaatcattcat 63  Q
    ||||||||||||||||||||||||||||||    
T  38529934 tcatctaaataatttattttaatcattcat 38529905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 8044317 - 8044345
Alignment:
Q  34 tcatctaaataatttattttaatcattca 62  Q
    |||||||||||||||||||||||||||||    
T  8044317 tcatctaaataatttattttaatcattca 8044345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 19037168 - 19037200
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    ||||||| |||||||||||||||||||||||||    
T  19037168 accaatggcaccaaaaaactatggcacccaagt 19037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 39707503 - 39707535
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    ||||||| |||||||||||||||||||||||||    
T  39707503 accaatggcaccaaaaaactatggcacccaagt 39707535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 2651631 - 2651751
Alignment:
Q  6 tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacac 105  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    |||     ||||||||||||||| ||||||| |||    
T  2651631 tatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcatacatct-----aaaatgaacttatgtcaccaatggcac 2651725  T
Q  106 caaaaaactatggcacccaagtattt 131  Q
    ||||||||||||||||||||||||||    
T  2651726 caaaaaactatggcacccaagtattt 2651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 34928831 - 34928935
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtat 129  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||    |||||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  34928831 tcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacatatgtcatcaatgacactaaaaaactatggcacccaagtat 34928930  T
Q  130 ttccc 134  Q
    |||||    
T  34928931 ttccc 34928935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 22658864 - 22658965
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtat 129  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||    |||||||||||||||||||||  |||||||||||||||||||| || |||    
T  22658864 tcatttaaataatttattttaatcattcattcatcattctctttcatctaaaatgaacttatgttaccaatcgcaccaaaaaactatggcacctaaatat 22658963  T
Q  130 tt 131  Q
    ||    
T  22658964 tt 22658965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 37480357 - 37480412
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatttccc 134  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  37480357 aaaatgaacttatgtcaccaatgacaccaaaaaactatagcacccaagtatttccc 37480412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 14151993 - 14151895
Alignment:
Q  37 tctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt 131  Q
    ||||||||||||||||||||||||||||||  ||| ||||||    ||||||||| ||||| | |||||||| ||||||||||||  ||||||||||||    
T  14151993 tctaaataatttattttaatcattcattcattattatctctcatctaaaatgaacctatgtcatcaatgacatcaaaaaactatgatacccaagtattt 14151895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 27554992 - 27554872
Alignment:
Q  19 ccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaact 114  Q
    |||||||||| || |||||||||||||| ||||||||| ||| ||||| |||| ||||||    ||||| ||||||| | | ||||| ||  ||||||||    
T  27554992 ccaacatattttctctcatctaaataatctattttaattatttattcatcattttctctcatctaaaataaacttatatcatcaatggcagtaaaaaact 27554893  T
Q  115 atggcacccaagtatttcccg 135  Q
    |||||||| ||||||||||||    
T  27554892 atggcaccaaagtatttcccg 27554872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 33953157 - 33953210
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||||||||||||||||||||| |||||| |||||||||||||||    
T  33953157 attctctctcatctaaataatttattttaattattcatccaccattctctctca 33953210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 19824613 - 19824666
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||||||||||||||||||||||||||||  | ||||||||||||    
T  19824613 attctctctcatctaaataatttattttaatcattcatctaacattctctctca 19824666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 25089454 - 25089502
Alignment:
Q  157 tatataagtttaaaatacacattcgcgcttcagttttcactctcataac 205  Q
    ||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  25089454 tatataagtttaaaaaacacattcgcgctttagttttcactttcataac 25089502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 22029905 - 22029859
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||||||||||||||||||||| || ||||||||||||    
T  22029905 ctcatccaaataatttattttaatcattcatccaacattctctctca 22029859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 22473611 - 22473665
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatttccc 134  Q
    ||||||||| ||||| |||| || | ||||||||||||||||||||||||||||||    
T  22473611 aaaatgaacatatgtcacca-tggcgccaaaaaactatggcacccaagtatttccc 22473665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 33922922 - 33922871
Alignment:
Q  28 tctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||| |||||||| || |||||||||||||||||||| | ||||||||||||    
T  33922922 tctctctcatctacattatttattttaatcattcatttatcattctctctca 33922871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 31882600 - 31882650
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctc 76  Q
    |||||| |||||||||||||||||||||||| ||||||  | |||||||||    
T  31882600 attctctctcatctaaataatttattttaattattcatcaaacattctctc 31882650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 37515646 - 37515524
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  ||| ||  ||||||||||||||||||||||||||||  ||    || | ||| ||||||||||||||| | |||| ||    
T  37515646 tctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc--tc----ttttatct-aaaatgaacttatgtcatcaataac 37515554  T
Q  104 accaaaaaactatggcacccaagtatttccc 134  Q
    ||| |||||||||||||||||  ||||||||    
T  37515553 acc-aaaaactatggcacccagatatttccc 37515524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 2630861 - 2630808
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| | |||||||||||||||| || ||||||||| || ||||||||||||    
T  2630861 attctctcacatctaaataatttatgtttatcattcatccaacattctctctca 2630808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 18623638 - 18623597
Alignment:
Q  36 atctaaataatttattttaatcattcattcaccattctctct 77  Q
    ||||||||||||||||||||||||||||  | ||||||||||    
T  18623638 atctaaataatttattttaatcattcatctatcattctctct 18623597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 205
Target Start/End: Original strand, 25147423 - 25147472
Alignment:
Q  157 tatataagtttaaaataca-cattcgcgcttcagttttcactctcataac 205  Q
    ||||||||||||||| ||| ||||||||||| |||||||||| |||||||    
T  25147423 tatataagtttaaaaaacaacattcgcgctttagttttcactttcataac 25147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 42321089 - 42321142
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||||||||||| |||||||| |||||||  | ||||||||||||    
T  42321089 attctctctcatctaaataatatattttaaacattcatctaacattctctctca 42321142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 4835054 - 4834920
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaa 99  Q
    ||||||| ||||||  ||||  ||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||    |||||||| ||||| |||||    
T  4835054 tctatctttctcttaacaactcattctctttcacctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctatgtcaccaa 4834955  T
Q  100 tgacaccaaaaaactatggcacccaagtatttccc 134  Q
    |  ||||||||||||||||||||||||||||||||    
T  4834954 tatcaccaaaaaactatggcacccaagtatttccc 4834920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 33938676 - 33938556
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  |||   |||||| ||||||||||||||||||||||||||||   ||    || | ||| ||||||||| ||||| | ||||| |    
T  33938676 tctatctctctcttaacaattcattctctctcatctaaataatttattttaatcatta--tc----ttttatct-aaaatgaacctatgtcatcaatggc 33938584  T
Q  104 accaaaaaactatggcacccaagtattt 131  Q
    ||||||||||||||||||||||||||||    
T  33938583 accaaaaaactatggcacccaagtattt 33938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 16467674 - 16467730
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatttcccg 135  Q
    ||||||||| ||| | ||||||| |||||||||||||| ||||||||||||||||||    
T  16467674 aaaatgaacctatatcaccaatgtcaccaaaaaactatcgcacccaagtatttcccg 16467730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 16499825 - 16499773
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt 131  Q
    ||||||||| ||| | ||||||| |||||||||||||||||||||||||||||    
T  16499825 aaaatgaacctatatcaccaatgtcaccaaaaaactatggcacccaagtattt 16499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 20896249 - 20896212
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcat 63  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20896249 attctctctcatctaaataatttattttaatcattcat 20896212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 16508750 - 16508698
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt 131  Q
    ||||||||| ||| | ||||||| |||||||||| ||||||||||||||||||    
T  16508750 aaaatgaacctatatcaccaatgtcaccaaaaaaatatggcacccaagtattt 16508698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 41474362 - 41474300
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattca 66  Q
    ||||| ||||||||  |||| |||| || || || ||||||||||||||||||||||||||||    
T  41474362 tctatttctctcttaacaacttattatctcttatttaaataatttattttaatcattcattca 41474300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 44132935 - 44132898
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcat 63  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  44132935 attctctctcatcaaaataatttattttaatcattcat 44132898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 16467627 - 16467663
Alignment:
Q  25 tattctcgctcatctaaataatttattttaatcattc 61  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  16467627 tattctctctcatctaaataatttagtttaatcattc 16467663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 16508846 - 16508878
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    ||||||| |||||||||||||||||||||||||    
T  16508846 accaatggcaccaaaaaactatggcacccaagt 16508878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 29768347 - 29768303
Alignment:
Q  88 ttatgttaccaatgacaccaaaaaactatggcacccaagtatttc 132  Q
    |||||||||||||| || ||||||| ||||||| |||||||||||    
T  29768347 ttatgttaccaatggcatcaaaaaattatggcatccaagtatttc 29768303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 9928268 - 9928392
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| ||||||| |    
T  9928268 tctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggc 9928360  T
Q  104 accaaaaaactatggcacccaagtatttcccg 135  Q
    ||||||||||||||||||||||||||||||||    
T  9928361 accaaaaaactatggcacccaagtatttcccg 9928392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 22469706 - 22469829
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgac 103  Q
    ||||||||| ||||  ||||  |||||| |||||||||||||||||||||||||||||  |     |||  ||| ||||||||| ||||| ||||||| |    
T  22469706 tctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggc 22469798  T
Q  104 accaaaaaactatggcacccaagtatttccc 134  Q
    |||||||||||||||||||| ||||||||||    
T  22469799 accaaaaaactatggcacccgagtatttccc 22469829  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 457685 - 457731
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||    
T  457685 ctcatctaaataatttattttaatcattcatccatcattctctctca 457731  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 7506641 - 7506696
Alignment:
Q  6 tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc 61  Q
    ||||||||||||  ||||  |||||| |||||||||||||||||||||||||||||    
T  7506641 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc 7506696  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 28963652 - 28963599
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    |||||| |||||| |||||| |||||||||||||||||||  ||||||||||||    
T  28963652 attctctctcatcaaaataagttattttaatcattcattcttcattctctctca 28963599  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 22469687 - 22469655
Alignment:
Q  95 accaatgacaccaaaaaactatggcacccaagt 127  Q
    |||||||||||||||||||||||||||||||||    
T  22469687 accaatgacaccaaaaaactatggcacccaagt 22469655  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 6139347 - 6139381
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcatt 60  Q
    |||||| ||||||||||||||||||||||||||||    
T  6139347 attctctctcatctaaataatttattttaatcatt 6139381  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 31743867 - 31743922
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc 61  Q
    ||||||||||| ||  |||| |||||||  ||||||||||||||||||||||||||||    
T  31743867 tctatctctcttttaacaacttattctc--tcatctaaataatttattttaatcattc 31743922  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 3037428 - 3037383
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctctctca 79  Q
    ||||||||| |||||||||||||||||||| || |||| |||||||    
T  3037428 tcatctaaaaaatttattttaatcattcatccaacattttctctca 3037383  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 8585739 - 8585780
Alignment:
Q  34 tcatctaaataatttattttaatcattcattcaccattctct 75  Q
    |||||||||| ||||||||||||||||||| || ||||||||    
T  8585739 tcatctaaatcatttattttaatcattcatccatcattctct 8585780  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 28067341 - 28067378
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcattcat 63  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  28067341 attctctctcatcaaaataatttattttaatcattcat 28067378  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 31743933 - 31743986
Alignment:
Q  79 aaaatgaacttatgttaccaatgac-accaaaaaactatggcacccaagtattt 131  Q
    ||||||||||||||||||||||| | |  ||||||||||||||||||| |||||    
T  31743933 aaaatgaacttatgttaccaatggcaataaaaaaactatggcacccaaatattt 31743986  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 9549395 - 9549452
Alignment:
Q  26 attctcgctcatctaaataatttattttaatcat----tcattcaccattctctctca 79  Q
    |||||| || || |||||||||||||||||||||    ||||||||||||||||||||    
T  9549395 attctctctaatttaaataatttattttaatcattcattcattcaccattctctctca 9549452  T

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Target: scaffold0176 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 15166 - 15219
Alignment:
Q  79 aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatttc 132  Q
    ||||||||| ||||| ||||||| |||||||||| |||||||||||||||||||    
T  15166 aaaatgaacatatgtcaccaatggcaccaaaaaattatggcacccaagtatttc 15219  T

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Target: scaffold0176; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 15091 - 15058
Alignment:
Q  92 gttaccaatgacaccaaaaaactatggcacccaa 125  Q
    |||||| |||||||||||||||||||||||||||    
T  15091 gttacctatgacaccaaaaaactatggcacccaa 15058  T

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Target: scaffold0176; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 15098 - 15154
Alignment:
Q  4 tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcatt 60  Q
    ||||||||| ||||  ||||  |||||| |||||| |||||||||||||||||||||    
T  15098 tctatctctatcttaacaactcattctctctcatcaaaataatttattttaatcatt 15154  T

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Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 20321 - 20354
Alignment:
Q  33 ctcatctaaataatttattttaatcattcattca 66  Q
    ||||||||||||||||||||||||||||||||||    
T  20321 ctcatctaaataatttattttaatcattcattca 20354  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 31608 - 31637
Alignment:
Q  34 tcatctaaataatttattttaatcattcat 63  Q
    ||||||||||||||||||||||||||||||    
T  31608 tcatctaaataatttattttaatcattcat 31637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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