View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_231 (Length: 248)
Name: NF1498_high_231
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_231 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 27778141 - 27777961
Alignment:
| Q |
1 |
atattgaaattcttataacaaattgttgcattttcaatccttcaccttctcttagtgcaatggttattaaccattacaaacttaagcatcaaattttgtg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27778141 |
atattgaaattcttataacaaattgttgtattttcaatccttcaccttctcttagtgcaatggttattaaccattacagacttaagcatcaaattttgtg |
27778042 |
T |
|
| Q |
101 |
ctataatttaagtggtatgggttgcagtgctggacttatagccatcgaccttgccaaacaactactgcaggttagataatc |
181 |
Q |
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| T |
27778041 |
ctataatttaagtggtatgggttgcagtgctggacttatagccatcgaccttgccaaacaactactgcaggttagataatc |
27777961 |
T |
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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 19748083 - 19747904
Alignment:
| Q |
1 |
atattgaaattcttataacaaattgttgcattttcaatccttcaccttctcttagtgcaatggttattaaccattacaaacttaagcatcaaattttgtg |
100 |
Q |
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|||| ||||||||||||||||||||| | || ||||||||| ||||||||||||||| |||||| | ||||||| ||||||||||||| ||||||||| |
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| T |
19748083 |
atatagaaattcttataacaaattgtagtatattcaatcctgtaccttctcttagtgctatggttgtcaaccatttcaaacttaagcatacaattttgtg |
19747984 |
T |
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| Q |
101 |
ctataatttaagtggtatgggttgcagtgctggacttatagccatcgaccttgccaaacaactactgcaggttagataat |
180 |
Q |
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| T |
19747983 |
ctataatttaagtggtatgggttgtagcgcaggactcatagccatcgaccttgctaaacaactcttacaggttagataat |
19747904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 19791723 - 19791902
Alignment:
| Q |
1 |
atattgaaattcttataacaaattgttgcattttcaatccttcaccttctcttagtgcaatggttattaaccattacaaacttaagcatcaaattttgtg |
100 |
Q |
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|||| ||||||||||||||||||||| | || ||||||||| ||||||||||||||| |||||| | ||||||| ||||||||||||| ||||||||| |
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| T |
19791723 |
atatagaaattcttataacaaattgtagtatattcaatcctgtaccttctcttagtgctatggttgtcaaccatttcaaacttaagcatacaattttgtg |
19791822 |
T |
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| Q |
101 |
ctataatttaagtggtatgggttgcagtgctggacttatagccatcgaccttgccaaacaactactgcaggttagataat |
180 |
Q |
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|||||||||||||||||||||||| || || ||||| ||||||||||||||||| |||||||| | ||||||||||||| |
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| T |
19791823 |
ctataatttaagtggtatgggttgtagcgcaggactcatagccatcgaccttgctaaacaactcttacaggttagataat |
19791902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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