View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1498_high_233 (Length: 247)
Name: NF1498_high_233
Description: NF1498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1498_high_233 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 972054 - 972290
Alignment:
| Q |
2 |
tagagtttagatatcattgcaacagatgattatatatcatatcagtgacctggcctggctgctagtgcatagaaagttagtattgtgaaagtgaaagaga |
101 |
Q |
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| T |
972054 |
tagagtttatatatcattgcaacagatgattatatatcatatcagtgacctggcctggctgctagtgcatagaaagttagtattgtgaaagtgaaagaga |
972153 |
T |
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| Q |
102 |
cgtgtatgagaaaccgaggcggagagaatgtgtaaaataatattacaaaaaacattttgaccacaaataaaattgggacggggcgggtaacccgagggtt |
201 |
Q |
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| T |
972154 |
tgtgtatgagaaaccgaggcggagagaatgtgtaaaataatatta-aaaaaccattttgtccacaaataaaattgggacgggacgggtaacccgagggtt |
972252 |
T |
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| Q |
202 |
aatccgaacccgatcactgtttcagttatgttcatctc |
239 |
Q |
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| T |
972253 |
aatccgaacccgatcactgtttcagttatgttcatctc |
972290 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 5587086 - 5587196
Alignment:
| Q |
70 |
atagaaagttagtattgtgaaagtgaaagagacgtgtatgagaaaccgaggcggagagaatgtgtaaaataatatt-acaaaaaacattttgaccacaaa |
168 |
Q |
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| T |
5587086 |
atagaaagttagtattgtgaaagagaaaaagtcatgtataagagaccgaaactgagtgagtatgtaaaataatattaaaaaaaaatattttgtcctcaaa |
5587185 |
T |
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| Q |
169 |
taaaattggga |
179 |
Q |
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| T |
5587186 |
ttaaattggga |
5587196 |
T |
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